Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K21
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    27   3.5  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    26   4.7  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   8.2  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   8.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.2  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   8.2  

>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 62  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPKWASTSRLA 241
           D  +PS  P    +SS+  S  RH  +   +L S     +   D +  R  +    S+L 
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDGLRDRHIRKVRVSQLL 178

Query: 242 FLNAKR 259
            L  +R
Sbjct: 179 DLQRRR 184


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 220 PFWIAEIDAIGFFLNTCITAP 158
           PFW+AE+ AI  F++  + AP
Sbjct: 43  PFWLAEVLAINSFVSIHMPAP 63


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 185 KTDSIDLRDPKWASTSRLA 241
           K   +D RDP W S SR A
Sbjct: 376 KEKQVDFRDPVWKSVSRQA 394


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 287 GSKQCDFTSRVSHSKTRDATSKPILDRGD 201
           GSK      R  H+KTR   SKP+ +  D
Sbjct: 234 GSKSRARNERKFHAKTRKTPSKPVTNNED 262


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 56  QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD-SIDLRDPKWAS 226
           QH+ +L    P  +   S+ + E +   E + + RSRD       + S +  D  W S
Sbjct: 33  QHNGSLAHEGPTNQTDYSSRHHESQFSQEAHAEQRSRDDEEANSFEGSCNNSDQSWTS 90


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 111 VDDFRSWRGVVLGRAASCCDLLRLS 37
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,973
Number of Sequences: 5004
Number of extensions: 41590
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)