Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K21
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.17 
01_01_0782 - 6056440-6057954                                           32   0.52 
01_01_0780 - 6036454-6037992                                           29   3.7  
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060...    29   4.9  
01_01_0779 - 6030245-6031780                                           29   4.9  
01_06_0695 - 31292622-31293317                                         28   6.4  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +2

Query: 74  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPKWASTS 232
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D    K   +S
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRDYSHSKHERSS 417


>01_01_0782 - 6056440-6057954
          Length = 504

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -3

Query: 337 SRIRARICSLWSPESREAL--NNVTLLVAFRIQKRE-TRRRSPFWIAEIDAI-GFFLNTC 170
           +R+RA + SLWSP+S E +  + +  +   +   RE  R R P  +    A+  F L   
Sbjct: 335 ARVRAEVASLWSPDSGEPITADKIAEMKYTKAVAREVVRHRPPATLMPHIALQNFQLTES 394

Query: 169 ITAPKVRI*LSSM 131
            T PK  + L SM
Sbjct: 395 YTIPKGTLVLPSM 407


>01_01_0780 - 6036454-6037992
          Length = 512

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 337 SRIRARICSLWSPESREALNNVTLLVAFRIQKRETRRRSPFW 212
           +R+RA + +LWSPES E +    ++   +  +   R    +W
Sbjct: 336 ARVRAEVAALWSPESGEPI-TAEMMTEMKYTQAVAREVVRYW 376


>08_02_0104 +
           12404890-12405129,12405244-12405333,12405953-12406036,
           12406888-12407132,12409032-12409095,12409270-12409968,
           12410063-12410176,12410287-12410418,12410594-12410770,
           12411085-12411138,12411230-12411292,12411396-12412307,
           12412408-12412535,12413680-12413962
          Length = 1094

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = +2

Query: 20  ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 199
           +SPG  L   R  HD +L         KSST  +  R   E      SR     +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790

Query: 200 DLRDP----KWASTSR 235
           +  +     KW S  R
Sbjct: 791 ENMEATTGNKWPSLRR 806


>01_01_0779 - 6030245-6031780
          Length = 511

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 337 SRIRARICSLWSPESREAL 281
           +R+RA + +LWSPES E +
Sbjct: 342 ARVRAEVAALWSPESGEPI 360


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +2

Query: 26  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 160
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,684
Number of Sequences: 37544
Number of extensions: 338850
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)