Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K19
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    30   0.45 
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    27   2.4  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    27   2.4  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.4  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   4.2  

>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 367 SNVAAELFGHAPQPQQFDKCLVRHCVKCLGRSLAPPRDIPAASSCYPQAPRP 522
           SNVAAE+   A QP   D  L  + VK       PP ++ + SS     P+P
Sbjct: 222 SNVAAEVSNDASQPSNQDSSLNSNIVK----PPLPPSNVQSNSSSSENVPKP 269


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 360 YDTASTTLAVNNEMSSPVKVGRGVRQGDPLSP 265
           YDT    +A+  E S   KVG  ++ G P  P
Sbjct: 458 YDTQDAIVALQEEASEGYKVGLDLKTGMPFDP 489


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = -3

Query: 555 APTVRWRIPQYWTR 514
           AP+V+WR+P++W +
Sbjct: 191 APSVKWRMPRFWLK 204


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 564  DLSAPTVRWRIPQYWTRCLGIAGRSCGNVTW 472
            DL    ++ ++ Q+W  C G+     GN +W
Sbjct: 958  DLLKARIKDKVKQFWILCKGLESTPYGNSSW 988


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 476 VTFPQLLPAIPKHRVQYCGILQRTV 550
           +TF +LL  + +H+++ CGIL++ V
Sbjct: 794 ITFDELLAKV-EHKIKLCGILKQAV 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,415
Number of Sequences: 5004
Number of extensions: 72994
Number of successful extensions: 227
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)