Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K18
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical pr...   130   9e-31
Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical pr...   130   9e-31
U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    32   0.43 
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    32   0.43 
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    30   1.7  
Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme...    29   3.0  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    29   3.0  
U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical p...    29   4.0  
AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical ...    29   4.0  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical pr...    28   9.2  
L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein pr...    28   9.2  
AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical ...    28   9.2  
AF003384-5|AAB54239.2|  324|Caenorhabditis elegans Uncoupling pr...    28   9.2  

>Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical
           protein M04G12.1b protein.
          Length = 403

 Score =  130 bits (315), Expect = 9e-31
 Identities = 58/85 (68%), Positives = 68/85 (80%), Gaps = 2/85 (2%)
 Frame = -3

Query: 635 LLKCTLCQERLEDTHFVQCPSQPHHKFCFPCSRXSIKRQ-QGSEVYCPSGEKCPLANSTV 459
           +L+CTLC ERLEDTHFVQCP+   HKFCFPCSR SIK Q + S++YCPSG+KCPL  S +
Sbjct: 268 VLRCTLCNERLEDTHFVQCPTVSIHKFCFPCSRSSIKDQCKSSDMYCPSGDKCPLVGSAM 327

Query: 458 PWAFMQGEIATIMGDELKP-KKERE 387
           PWAFMQGEIA I+GDE    K+ RE
Sbjct: 328 PWAFMQGEIAQILGDEYDEFKRTRE 352


>Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical
           protein M04G12.1a protein.
          Length = 457

 Score =  130 bits (315), Expect = 9e-31
 Identities = 58/85 (68%), Positives = 68/85 (80%), Gaps = 2/85 (2%)
 Frame = -3

Query: 635 LLKCTLCQERLEDTHFVQCPSQPHHKFCFPCSRXSIKRQ-QGSEVYCPSGEKCPLANSTV 459
           +L+CTLC ERLEDTHFVQCP+   HKFCFPCSR SIK Q + S++YCPSG+KCPL  S +
Sbjct: 295 VLRCTLCNERLEDTHFVQCPTVSIHKFCFPCSRSSIKDQCKSSDMYCPSGDKCPLVGSAM 354

Query: 458 PWAFMQGEIATIMGDELKP-KKERE 387
           PWAFMQGEIA I+GDE    K+ RE
Sbjct: 355 PWAFMQGEIAQILGDEYDEFKRTRE 379


>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 641 APLLKCTLCQERLEDTHFVQCPSQPHHKFCFPCS 540
           A ++ CT CQ +++D  F+    + +H+ C  CS
Sbjct: 93  AVIVICTQCQHQIQDKFFLSIDGRNYHENCLQCS 126


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 641 APLLKCTLCQERLEDTHFVQCPSQPHHKFCFPCS 540
           A ++ CT CQ +++D  F+    + +H+ C  CS
Sbjct: 93  AVIVICTQCQHQIQDKFFLSIDGRNYHENCLQCS 126


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 250 STVTISVRSTNLTIDSISLPDDRRNASWTSFGDSCARRASDDAPVMFRMK 101
           ST+T  ++S N ++DS + PD   N         C RR    +P + RM+
Sbjct: 25  STMTTPLQSPNFSLDSPNYPDSLSNGGGKDDKKKC-RRYKTPSPQLLRMR 73


>Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 656 PASASAPLLKCTLCQERLEDTHFVQCPSQPHHKFCFPC 543
           P      LL C +C +R +    + C     H FC+PC
Sbjct: 33  PLEKIEQLLTCPICLDRYKQPKLLPC----QHTFCYPC 66


>Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 656 PASASAPLLKCTLCQERLEDTHFVQCPSQPHHKFCFPC 543
           P      LL C +C +R +    + C     H FC+PC
Sbjct: 33  PLEKIEQLLTCPICLDRYKQPKLLPC----QHTFCYPC 66


>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
            protein 1 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 652  HPHPHRYSNA-PCARNAWKIRISCSAPANRTISSVSPAPGTRS 527
            H H    SNA   AR   K+ +      NRT SS SP P  +S
Sbjct: 999  HVHSQTVSNALSTAREEKKLHLKIDHARNRTFSSSSPVPDGQS 1041


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = -3

Query: 602 EDTHFVQCPSQ-PHHKFCFPCSRXSIKRQQGSEVYCPSGEKCPLANSTVPWAFMQGEIAT 426
           E   F    SQ P    C   +      Q+  ++Y    +KC +A+ TVP  ++  E   
Sbjct: 114 ETAQFQGVESQFPIFLACISLTAYIRANQEYGDIYFKKLQKCLVADETVPGGYIVPECYC 173

Query: 425 IMGDELKPKKERET*SGTWSGRLYLLS 345
           +  DE    KERE  + T    LY LS
Sbjct: 174 V--DEFIMDKEREQPNST---ELYALS 195


>U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical
           protein C06A5.8a protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = -3

Query: 632 LKCTLCQERLEDTHFVQCPSQPHHKFCFPCSRXSIKRQQGSEVYCPS---GEKCPLANST 462
           LKC +C     +T  +       H FC  C +   K    + + CPS     KC +A  +
Sbjct: 36  LKCQVCCTNYNETTKLARGLHCGHTFCTECIKTMQKYGNSAYLECPSCRAETKCDIAAVS 95

Query: 461 VPWAFMQ 441
             +A M+
Sbjct: 96  TNFAIME 102


>AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical
           protein F32D1.1 protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 95  RELHSEHYGSVVGRPPRTRITKRSPRCISPIVGK*NRIDRE 217
           R+  S+  GS+ G PP  R      RC +P++ K   +D E
Sbjct: 234 RQSSSQSIGSLAGIPPARRAPDIPKRCSNPLIRKAMGMDTE 274


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 100 TSFGTLRERRRTPAAHKNHQTKSTMHFADRREVKSN 207
           TSFG  R +     AH+ HQT +  H ++     S+
Sbjct: 220 TSFGMSRSKSMGSVAHEAHQTSNNQHSSETHGTASS 255


>Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical
           protein F01D4.6a protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 629 KCTLCQERLEDTHFVQCPSQPHHKFCFPCS 540
           KC  C E++ D +  +  ++ +H+ C  C+
Sbjct: 28  KCNCCNEQIYDRYIYRMDNRSYHENCVKCT 57


>L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein
           protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 629 KCTLCQERLEDTHFVQCPSQPHHKFCFPCS 540
           KC  C E++ D +  +  ++ +H+ C  C+
Sbjct: 28  KCNCCNEQIYDRYIYRMDNRSYHENCVKCT 57


>AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical
           protein Y75B8A.7 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 108 RNITGASSDARRAQESPNEVHDAFRRSSG 194
           +N TG S+D       PNE H+A +   G
Sbjct: 454 QNSTGNSADGAAGATKPNEAHEAIKSKMG 482


>AF003384-5|AAB54239.2|  324|Caenorhabditis elegans Uncoupling
           protein (mitochondrialsubstrate carrier) protein 4
           protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 499 QYTSDPCCLLIEXREQGKQNLWCGWLGHCTK 591
           +YT    C     R QG   LW GW+ +C +
Sbjct: 161 RYTGATDCFRSLYRTQGFFGLWIGWMPNCQR 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,491,525
Number of Sequences: 27780
Number of extensions: 388854
Number of successful extensions: 1251
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)