Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K17
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0811 - 28246801-28247049,28247161-28247384,28248236-282484...    29   4.4  
11_01_0762 + 6400052-6401845,6401977-6402609                           28   7.6  

>04_04_0811 -
           28246801-28247049,28247161-28247384,28248236-28248435,
           28248612-28248888,28249035-28249104
          Length = 339

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +2

Query: 20  HGRKSPDPHPRGRWGMW---ELNLTKNSCRSQPAPYLGP 127
           HG K      R RW  W   E  LT  SCR  PAP   P
Sbjct: 30  HGYKVYGRGGRRRWERWVEREFVLTPASCREVPAPVAPP 68


>11_01_0762 + 6400052-6401845,6401977-6402609
          Length = 808

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 127 RSEVGRRL*AAGVFSEVQLPHTPPAARVGIRRFSPVEKKKKK 2
           R ++   L A G   E+QLP  PPAA       +P++K+KKK
Sbjct: 474 RKQLQTFLLANGGEDEIQLPPVPPAAT------NPIKKRKKK 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,611,128
Number of Sequences: 37544
Number of extensions: 421822
Number of successful extensions: 956
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)