Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K13
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.16 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 474 PPPX---GGXXXPPPPPGXXXKKKKKXXXPPPPP 566
           PPP    GG   PPPPPG           PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG--AGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 501 PPPPPGXXXKKKKKXXXPPPPPXXXSXXXTXPPP 602
           PPPPP            P PPP         PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 475 PPPXXXXXXPPPPPXXXKKKKKKXXXPPPPP 567
           PP       PPPPP            PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +1

Query: 460 KXXKTPPPXXXXXXPPPPPXXXKKKKKKXXXPPPPPXXXXXXXXXPP 600
           K    PPP      P P P            PPPPP         PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 475 PPPXXXXXXPPPPPXXXKKKKKKXXXPPPPP 567
           PPP      PPPPP            PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGA-GPPPPPPP 781



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 551 PPPPPPXXXXXXXXPPP 601
           PPPPPP        PPP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 551 PPPPPPXXXXXXXXPPP 601
           PPPPPP        PPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 551 PPPPPPXXXXXXXXPPP 601
           PPPPPP        PPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 480 PXGGXXXPPPPPGXXXKKKKKXXXPPPPP 566
           P G    PPPPPG     +     PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP---PPPPP 30



 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
 Frame = +3

Query: 453 PXKXXXNPPPXG----GXXXPPPPPGXXXKKKKK 542
           P      PPP G        PPPPPG   K+K K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 502 PPPPPXXXKKKKKKXXXPPPPP 567
           PPPPP     +      PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 551 PPPPPPXXXXXXXXPPP 601
           PPPPPP        PPP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 551 PPPPPPXXXXXXXXPPP 601
           PPPPPP        PPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 475 PPPXXXXXXPPPPPXXXKKKKKKXXXP 555
           PP       PPPPP     KK+K   P
Sbjct: 15  PPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 477 PPXGGXXXPPPPPGXXXKKKKKXXXPPPPPXXXSXXXTXPP 599
           PP G    PPPPP       ++     PPP   S   + PP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQ-----PPPLSSSRAVSNPP 389



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = +3

Query: 474 PPPXGGXXXPPPPPGXXXKKKKKXXXPPPPPXXXSXXXTXPP 599
           PPP        PP G           PPPP    +     PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
 Frame = +3

Query: 501 PPPPP------GXXXKKKKKXXXPPPPPXXXSXXXTXPPP 602
           PPPPP            + +   PPPPP         PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/43 (27%), Positives = 13/43 (30%)
 Frame = +3

Query: 474 PPPXGGXXXPPPPPGXXXKKKKKXXXPPPPPXXXSXXXTXPPP 602
           PPP         PP            PPPPP   +      PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
 Frame = +3

Query: 453  PXKXXXNPPPXGGXXXPPPPPGXXXKKKKKXXXP------PPPPXXXSXXXTXPPP 602
            P +     PP      PPPPP            P      PPPP   S   + P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +1

Query: 454  PXKXXKTPPPXXXXXXPPPPPXXXKKKKKKXXXPPPPP 567
            P +     PP      PPPPP            P  PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,316
Number of Sequences: 5004
Number of extensions: 21947
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)