Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_K11
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0270 - 2876907-2877547,2877838-2878012 31 1.1
01_05_0014 - 17162664-17163500 30 2.0
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 30 2.6
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 3.5
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.6
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 29 4.6
02_04_0238 + 21186072-21186883,21187315-21189346 29 4.6
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 6.0
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 6.0
>10_01_0270 - 2876907-2877547,2877838-2878012
Length = 271
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 691 FGYINPIIKSPDSIHQPPPDXTSIS---INPLTPY*KEFAPGLKPPLSSETPSAYLTPS 524
F Y NP +P + H+PPP T + + TP P K PL + +P Y P+
Sbjct: 168 FHYKNPSPPAPAAYHKPPPSYTHPAPPVYSYPTPAYSHPTPVYKQPLPTPSPPIYHPPA 226
>01_05_0014 - 17162664-17163500
Length = 278
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = -2
Query: 724 PLXHQATXPXDFGYINPIIKSPDSIH-QPPPDXTSISINPLTPY*--KEFAPG--LKPPL 560
P+ H + + P+ P S+ PP + + NP P+ + +P +K +
Sbjct: 32 PVEHYMMEGVNALWTQPLATVPGSLQIWSPPASSLVRPNPPRPHSAARSLSPRHVIKTKI 91
Query: 559 SSETPSAYLTPSSLGMAKGVSPP 491
++P+ TP LG+ K PP
Sbjct: 92 RGDSPARQPTPGELGLLKAAPPP 114
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -2
Query: 667 KSPDSIHQPPPDXTSISINP------LTPY*KEFAPGLKPPLSSETPSAYLTPSSLGMAK 506
K+P S QP S++ P +TP + P +PP++S TP+A TP++ A
Sbjct: 89 KAPVSQSQPATPVASVARTPPPQAPVVTP--EPAPPSAQPPVASATPAAAATPAAAVTAS 146
Query: 505 GVSPPYFQ 482
+ Y Q
Sbjct: 147 SDADVYSQ 154
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -2
Query: 661 PDSIHQPPPDXTSISINPLTPY*KEFAPGLKPPLSSETPSAYLTPSSLGMAKGVSPPYF 485
P + PPP SIS P P AP P + + PS+ PS + P+F
Sbjct: 93 PPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPSPPDAYPFTNYPFF 151
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 81 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 182
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 762 PPLYPFXLXLAVXPLXIKPPSPGISGTSTRSSNPXIPYTNHP 637
PPLYP + P+ I P SP + + P Y N P
Sbjct: 26 PPLYPTLSMADLAPVQIGPSSPSSPMSPASPATPVDAYANAP 67
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 608 GIDGNGCXVWGWLVYGIXGFDDRVDVPEIPGXGGL 712
GIDG + WL G+ G + ++ V I G GGL
Sbjct: 169 GIDGPKIELIRWLTEGVSGPEQQLKVVPIVGSGGL 203
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 73 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 219
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 240 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 61
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 60 ILHSF 46
+LHSF
Sbjct: 1408 LLHSF 1412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,492,278
Number of Sequences: 37544
Number of extensions: 472189
Number of successful extensions: 1368
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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