Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K11
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.9 protein.
          Length = 1142

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = -2

Query: 691 FGYINPIIKSP--DSIHQPPPDXTSISINPLTPY*KEFAPGLKPPLSSE-TPSAYLTPSS 521
           +GY N +   P  D + + P    SI  +P         P   PP+SS+ TPS  +   +
Sbjct: 403 YGYHNNMDTQPILDPVQEVPELAESIEQSP---------PVQNPPVSSQLTPSLEVEVPT 453

Query: 520 LGMAKGVSPPYFQVNDESQASRLISRHST 434
           L   + V   YF+V  +   S +IS  +T
Sbjct: 454 LAPGQWVEGEYFRVLSKKVISNIISSCTT 482


>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
            protein M70.1 protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
 Frame = -2

Query: 661  PDSIHQPPPDXTSISINPLTPY*KEFAPGLK-PPLSSETPSAYLTPSSL--GMAKGVSPP 491
            PD    P P    + + P  P   E    +      +E P   +TP       A  V   
Sbjct: 825  PDVPVNPTPQTAKVPVAPAPPAKDEKPKDVNVKKAETEKPKTEVTPKPAHKSAASKVDAT 884

Query: 490  YFQVNDESQASRLISRHSTHT 428
              +  D+S A   IS+  THT
Sbjct: 885  NTKTEDQSSAQNCISQSMTHT 905


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,414
Number of Sequences: 27780
Number of extensions: 354651
Number of successful extensions: 1094
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)