Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K10
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    73   7e-14
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    66   6e-12

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 72.5 bits (170), Expect = 7e-14
 Identities = 33/67 (49%), Positives = 42/67 (62%)
 Frame = -2

Query: 507 VDIAIPCNTKSSHSIGXIWWLXAXEVXXLRGVLPRDQRWDXVVDLFFYRDXEEXETARHP 328
           VDIAIP N K   SIG IW+L A EV  +RG L R   WD + DL+FYRD EE E     
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEA 218

Query: 327 RRSGASS 307
           +++ A++
Sbjct: 219 KKAAAAA 225



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 566 SYVNIPVIALC 534
           S+VNIPVIALC
Sbjct: 140 SFVNIPVIALC 150


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 30/67 (44%), Positives = 40/67 (59%)
 Frame = -2

Query: 507 VDIAIPCNTKSSHSIGXIWWLXAXEVXXLRGVLPRDQRWDXVVDLFFYRDXEEXETARHP 328
           VD+AIP N K   SIG  W+L A EV  LRG + R   W+ + DL+FYRD EE E     
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219

Query: 327 RRSGASS 307
           + + A++
Sbjct: 220 KAAAAAA 226



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 566 SYVNIPVIALC 534
           S+VNIPVIALC
Sbjct: 141 SFVNIPVIALC 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,694
Number of Sequences: 5004
Number of extensions: 25213
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)