Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K10
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    64   1e-10
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    64   1e-10
10_06_0025 + 9777991-9778239,9778349-9778893,9779148-9779234,977...    31   1.5  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 28/53 (52%), Positives = 34/53 (64%)
 Frame = -2

Query: 507 VDIAIPCNTKSSHSIGXIWWLXAXEVXXLRGVLPRDQRWDXVVDLFFYRDXEE 349
           VDI IP N K   SIG ++WL A  V  +RG +    +WD +VDLFFYRD EE
Sbjct: 161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEE 213


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 28/53 (52%), Positives = 35/53 (66%)
 Frame = -2

Query: 507 VDIAIPCNTKSSHSIGXIWWLXAXEVXXLRGVLPRDQRWDXVVDLFFYRDXEE 349
           VDI IP N K  +SIG ++WL A  V  +RG +    +WD +VDLFFYRD EE
Sbjct: 161 VDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEE 213


>10_06_0025 +
           9777991-9778239,9778349-9778893,9779148-9779234,
           9779331-9779387,9779490-9779728,9779852-9779970,
           9780108-9780194,9780297-9780347
          Length = 477

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +1

Query: 535 HKAITGMLTYXGXGKLGLMV-----FVAGVPXXLYXXQVXGXXXLGIW 663
           H A++G+LT  G  K+G  V     ++AG+P  ++   V     +G+W
Sbjct: 388 HSALSGVLTGCGKQKIGARVNLGAFYLAGIPMAVFLAFVLHLNGMGLW 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,973,204
Number of Sequences: 37544
Number of extensions: 197301
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)