Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_K06
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 240 1e-64
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 236 2e-63
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 97 2e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 51 2e-07
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 5.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 240 bits (588), Expect = 1e-64
Identities = 105/133 (78%), Positives = 120/133 (90%)
Frame = -2
Query: 527 PXHGKYMACCMLYRGNVVPKDVNAAIXTIKXKRTIQFVDWCPTGFKVGINYQPPTVVPGG 348
P G+YMA C+LYRG+V+P+DV AA+ +IK +RTIQFVDWCPTGFK+GI Y+PP VPG
Sbjct: 311 PRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGS 370
Query: 347 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 168
+AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 371 GIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 430
Query: 167 ALEKDYEEVGMDS 129
ALE+DYEEVG DS
Sbjct: 431 ALERDYEEVGQDS 443
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = -1
Query: 663 PVSNFPXVXXAPXIFAEKAYHEQVFLRRDHQTHVXSPPNQMVKCDP 526
P +FP V +P + A KA+HE + ++ P NQMVKCDP
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFHESNSV-QEITNQCFEPYNQMVKCDP 311
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 236 bits (578), Expect = 2e-63
Identities = 104/133 (78%), Positives = 119/133 (89%)
Frame = -2
Query: 527 PXHGKYMACCMLYRGNVVPKDVNAAIXTIKXKRTIQFVDWCPTGFKVGINYQPPTVVPGG 348
P G+YMA C+LYRG+V+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G
Sbjct: 307 PRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGS 366
Query: 347 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 168
++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 367 EIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 426
Query: 167 ALEKDYEEVGMDS 129
ALE+DYEEVG DS
Sbjct: 427 ALERDYEEVGQDS 439
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = -1
Query: 663 PVSNFPXVXXAPXIFAEKAYHEQVFLRRDHQTHVXSPPNQMVKCDP 526
P +FP V AP + A KA+HE + ++ P NQMVKCDP
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFHESNSV-QEITNQCFEPYNQMVKCDP 307
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 97.5 bits (232), Expect = 2e-21
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Frame = -2
Query: 590 SFAEITKRMXGAXQTRW*NATPXHGKYMACCMLYRGNVVPKDVNAAIXTIKXKRTIQFVD 411
S E+T++M A A P HG+Y+ L+RG V K+V+ I +++ K + FV+
Sbjct: 285 SVPELTQQMFDANNMMV-AADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVE 343
Query: 410 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 231
W P + PP DL + + + N+T+I E + RL +F M+ ++AF+
Sbjct: 344 WIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFL 395
Query: 230 HWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 132
HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 51.2 bits (117), Expect = 2e-07
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Frame = -2
Query: 494 LYRGNVVPKDVNAAIXTIKXKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 315
+ +G P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----M 377
Query: 314 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 147
L+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 283 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 110
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 109 EPKSTK 92
EP+ TK
Sbjct: 208 EPRFTK 213
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = -2
Query: 515 KYMACCMLYRGNVVPKDVNAAIXTIKXKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 336
++ + Y N KDVN + TI +W PTG ++ Y V D
Sbjct: 142 RHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GN 199
Query: 335 VQR 327
VQR
Sbjct: 200 VQR 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,515
Number of Sequences: 5004
Number of extensions: 50495
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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