Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_J19
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.7  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   4.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    23   4.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    23   4.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    23   4.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    23   4.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    23   4.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    23   4.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   4.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 317 SLISNLSNTCDLTPLPEWSCEQSACWGACXSRA 219
           SL +N   +  LTP P W+  ++   G+  + A
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKAGACGSAITTA 130


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 547 FPXXPXXXXPPXXXXVPAXPRXXPAXPFP 633
           FP  P     P    +P      P+ PFP
Sbjct: 132 FPSRPMGPWVPMQEQIPRFRHIGPSTPFP 160


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 547 FPXXPXXXXPPXXXXVPAXPRXXPAXPFP 633
           FP  P     P    +P      P+ PFP
Sbjct: 132 FPSRPMGPWVPMQEQIPRFRHIGPSTPFP 160


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 547 FPXXPXXXXPPXXXXVPAXPRXXPAXPFP 633
           FP  P     P    +P      P+ PFP
Sbjct: 132 FPSRPMGPWVPMQEQIPRFRHIGPSTPFP 160


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 547 FPXXPXXXXPPXXXXVPAXPRXXPAXPFP 633
           FP  P     P    +P      P+ PFP
Sbjct: 132 FPSRPMGPWVPMQEQIPRFRHIGPSTPFP 160


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 547 FPXXPXXXXPPXXXXVPAXPRXXPAXPFP 633
           FP  P     P    +P      P+ PFP
Sbjct: 132 FPSRPMGPWVPMQEQIPRFRHIGPSTPFP 160


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 547 FPXXPXXXXPPXXXXVPAXPRXXPAXPFP 633
           FP  P     P    +P      P+ PFP
Sbjct: 132 FPSRPMGPWVPMQEQIPRFRHIGPSTPFP 160


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 547 FPXXPXXXXPPXXXXVPAXPRXXPAXPFP 633
           FP  P     P    +P      P+ PFP
Sbjct: 132 FPSRPMGPWVPMQEQIPRFRHIGPSTPFP 160


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 547 FPXXPXXXXPPXXXXVPAXPRXXPAXPFP 633
           FP  P     P    +P      P+ PFP
Sbjct: 135 FPSRPMGPWVPMQEQIPRFRHIGPSTPFP 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,941
Number of Sequences: 438
Number of extensions: 1997
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)