Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_J18
(808 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF488684-1|ABO43042.1| 1424|Homo sapiens nuclear receptor coacti... 32 2.8
BC122547-1|AAI22548.1| 1419|Homo sapiens nuclear receptor coacti... 32 2.8
BC119001-1|AAI19002.1| 1420|Homo sapiens nuclear receptor coacti... 32 2.8
BC092516-1|AAH92516.1| 1422|Homo sapiens nuclear receptor coacti... 32 2.8
AL034418-3|CAI42141.1| 1420|Homo sapiens nuclear receptor coacti... 32 2.8
AL034418-2|CAC17693.1| 1424|Homo sapiens nuclear receptor coacti... 32 2.8
AL034418-1|CAB40662.1| 1415|Homo sapiens nuclear receptor coacti... 32 2.8
AF016031-1|AAC51849.1| 1424|Homo sapiens thyroid hormone recepto... 32 2.8
AF012108-1|AAC51677.1| 1420|Homo sapiens Amplified in Breast Can... 32 2.8
AF010227-1|AAC51663.1| 1417|Homo sapiens receptor-associated coa... 32 2.8
AB209863-1|BAD93100.1| 1427|Homo sapiens nuclear receptor coacti... 32 2.8
CR456522-1|CAG30408.1| 931|Homo sapiens MKL1 protein. 30 8.6
BT009758-1|AAP88760.1| 577|Homo sapiens protein tyrosine phosph... 30 8.6
BC115039-1|AAI15040.1| 798|Homo sapiens MKL1 protein protein. 30 8.6
BC089042-1|AAH89042.1| 1636|Homo sapiens protein tyrosine phosph... 30 8.6
BC027711-1|AAH27711.2| 1320|Homo sapiens PTPN23 protein protein. 30 8.6
BC004881-1|AAH04881.2| 619|Homo sapiens PTPN23 protein protein. 30 8.6
AL646016-1|CAI17009.1| 1865|Homo sapiens formin 2 protein. 30 8.6
AL590490-1|CAH70931.1| 1865|Homo sapiens formin 2 protein. 30 8.6
AL513342-1|CAI17121.1| 1865|Homo sapiens formin 2 protein. 30 8.6
AL359918-1|CAI15795.1| 1865|Homo sapiens formin 2 protein. 30 8.6
AL110210-1|CAB53676.1| 990|Homo sapiens hypothetical protein pr... 30 8.6
AF290614-1|AAK28025.1| 1636|Homo sapiens protein tyrosine phosph... 30 8.6
AB209153-1|BAD92390.1| 1332|Homo sapiens formin 2 variant protein. 30 8.6
AB025194-1|BAB19280.1| 1636|Homo sapiens protein tyrosine phosph... 30 8.6
>EF488684-1|ABO43042.1| 1424|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1424
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 447 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 500
>BC122547-1|AAI22548.1| 1419|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1419
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 447 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 500
>BC119001-1|AAI19002.1| 1420|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1420
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 447 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 500
>BC092516-1|AAH92516.1| 1422|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1422
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 447 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 500
>AL034418-3|CAI42141.1| 1420|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1420
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 447 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 500
>AL034418-2|CAC17693.1| 1424|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1424
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 447 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 500
>AL034418-1|CAB40662.1| 1415|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1415
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 457 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 510
>AF016031-1|AAC51849.1| 1424|Homo sapiens thyroid hormone receptor
activator molecule protein.
Length = 1424
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 447 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 500
>AF012108-1|AAC51677.1| 1420|Homo sapiens Amplified in Breast Cancer
protein.
Length = 1420
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 447 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 500
>AF010227-1|AAC51663.1| 1417|Homo sapiens receptor-associated
coactivator 3 protein.
Length = 1417
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 447 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 500
>AB209863-1|BAD93100.1| 1427|Homo sapiens nuclear receptor
coactivator 3 isoform a variant protein.
Length = 1427
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 774 GXPTPXSFXNNXGGXALKHXXHPSPGISGTSTXIIKSPDSIHQPPQT*HPFPSI 613
G +P S+ NN G + H SPG++ I+ SP + P H F +
Sbjct: 451 GMQSPSSYQNNNYGLNMSSPPHGSPGLAPNQQNIMISPRNRGSPKIASHQFSPV 504
>CR456522-1|CAG30408.1| 931|Homo sapiens MKL1 protein.
Length = 931
Score = 30.3 bits (65), Expect = 8.6
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -1
Query: 685 INPDHQI-PGFHTPTTPDLTSISINPLTPY*KEFAPGLKP-PLSSEAPSAYLTPSSLGMX 512
+ P H P P T + ++ P P L+P P AP L P G+
Sbjct: 591 LGPAHPFNPSLAAPATNHIDPCAVAPGPPSVVVKQEALQPEPEPVPAPQLLLGPQGPGLI 650
Query: 511 KGVSPP 494
KGV+PP
Sbjct: 651 KGVAPP 656
>BT009758-1|AAP88760.1| 577|Homo sapiens protein tyrosine
phosphatase, non-receptor type 23 protein.
Length = 577
Score = 30.3 bits (65), Expect = 8.6
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 667 IPGFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 491
+P P + + S S PL+ P + P +PP+ EAPS+ SSL + ++P
Sbjct: 470 LPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVP-EAPSSGPPSSSLELLASLTPEA 528
Query: 490 FQVNDESQASRLISRHS 440
F ++ + + +S+H+
Sbjct: 529 FSLDSSLRGKQRMSKHN 545
>BC115039-1|AAI15040.1| 798|Homo sapiens MKL1 protein protein.
Length = 798
Score = 30.3 bits (65), Expect = 8.6
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -1
Query: 685 INPDHQI-PGFHTPTTPDLTSISINPLTPY*KEFAPGLKP-PLSSEAPSAYLTPSSLGMX 512
+ P H P P T + ++ P P L+P P AP L P G+
Sbjct: 591 LGPAHPFNPSLAAPATNHIDPCAVAPGPPSVVVKQEALQPEPEPVPAPQLLLGPQGPGLI 650
Query: 511 KGVSPP 494
KGV+PP
Sbjct: 651 KGVAPP 656
>BC089042-1|AAH89042.1| 1636|Homo sapiens protein tyrosine
phosphatase, non-receptor type 23 protein.
Length = 1636
Score = 30.3 bits (65), Expect = 8.6
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 667 IPGFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 491
+P P + + S S PL+ P + P +PP+ EAPS+ SSL + ++P
Sbjct: 1529 LPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVP-EAPSSGPPSSSLELLASLTPEA 1587
Query: 490 FQVNDESQASRLISRHS 440
F ++ + + +S+H+
Sbjct: 1588 FSLDSSLRGKQRMSKHN 1604
>BC027711-1|AAH27711.2| 1320|Homo sapiens PTPN23 protein protein.
Length = 1320
Score = 30.3 bits (65), Expect = 8.6
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 667 IPGFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 491
+P P + + S S PL+ P + P +PP+ EAPS+ SSL + ++P
Sbjct: 1213 LPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVP-EAPSSGPPSSSLELLASLTPEA 1271
Query: 490 FQVNDESQASRLISRHS 440
F ++ + + +S+H+
Sbjct: 1272 FSLDSSLRGKQRMSKHN 1288
>BC004881-1|AAH04881.2| 619|Homo sapiens PTPN23 protein protein.
Length = 619
Score = 30.3 bits (65), Expect = 8.6
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 667 IPGFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 491
+P P + + S S PL+ P + P +PP+ EAPS+ SSL + ++P
Sbjct: 512 LPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVP-EAPSSGPPSSSLELLASLTPEA 570
Query: 490 FQVNDESQASRLISRHS 440
F ++ + + +S+H+
Sbjct: 571 FSLDSSLRGKQRMSKHN 587
>AL646016-1|CAI17009.1| 1865|Homo sapiens formin 2 protein.
Length = 1865
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/73 (31%), Positives = 27/73 (36%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L +I P P PG PL P A +
Sbjct: 1065 PPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPP-----LPGAGIPLPPPLPGAGIP 1119
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 1120 PPPPLPGAGIPPP 1132
Score = 30.3 bits (65), Expect = 8.6
Identities = 22/73 (30%), Positives = 26/73 (35%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L + I P P PG P P A +
Sbjct: 1219 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPP-----LPGAGIPPPPPLPGAGIP 1273
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 1274 PPPPLPGAGIPPP 1286
>AL590490-1|CAH70931.1| 1865|Homo sapiens formin 2 protein.
Length = 1865
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/73 (31%), Positives = 27/73 (36%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L +I P P PG PL P A +
Sbjct: 1065 PPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPP-----LPGAGIPLPPPLPGAGIP 1119
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 1120 PPPPLPGAGIPPP 1132
Score = 30.3 bits (65), Expect = 8.6
Identities = 22/73 (30%), Positives = 26/73 (35%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L + I P P PG P P A +
Sbjct: 1219 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPP-----LPGAGIPPPPPLPGAGIP 1273
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 1274 PPPPLPGAGIPPP 1286
>AL513342-1|CAI17121.1| 1865|Homo sapiens formin 2 protein.
Length = 1865
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/73 (31%), Positives = 27/73 (36%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L +I P P PG PL P A +
Sbjct: 1065 PPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPP-----LPGAGIPLPPPLPGAGIP 1119
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 1120 PPPPLPGAGIPPP 1132
Score = 30.3 bits (65), Expect = 8.6
Identities = 22/73 (30%), Positives = 26/73 (35%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L + I P P PG P P A +
Sbjct: 1219 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPP-----LPGAGIPPPPPLPGAGIP 1273
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 1274 PPPPLPGAGIPPP 1286
>AL359918-1|CAI15795.1| 1865|Homo sapiens formin 2 protein.
Length = 1865
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/73 (31%), Positives = 27/73 (36%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L +I P P PG PL P A +
Sbjct: 1065 PPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPP-----LPGAGIPLPPPLPGAGIP 1119
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 1120 PPPPLPGAGIPPP 1132
Score = 30.3 bits (65), Expect = 8.6
Identities = 22/73 (30%), Positives = 26/73 (35%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L + I P P PG P P A +
Sbjct: 1219 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPP-----LPGAGIPPPPPLPGAGIP 1273
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 1274 PPPPLPGAGIPPP 1286
>AL110210-1|CAB53676.1| 990|Homo sapiens hypothetical protein
protein.
Length = 990
Score = 30.3 bits (65), Expect = 8.6
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 667 IPGFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 491
+P P + + S S PL+ P + P +PP+ EAPS+ SSL + ++P
Sbjct: 883 LPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVP-EAPSSGPPSSSLELLASLTPEA 941
Query: 490 FQVNDESQASRLISRHS 440
F ++ + + +S+H+
Sbjct: 942 FSLDSSLRGKQRMSKHN 958
>AF290614-1|AAK28025.1| 1636|Homo sapiens protein tyrosine phosphatase
TD14 protein.
Length = 1636
Score = 30.3 bits (65), Expect = 8.6
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 667 IPGFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 491
+P P + + S S PL+ P + P +PP+ EAPS+ SSL + ++P
Sbjct: 1529 LPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVP-EAPSSGPPSSSLELLASLTPEA 1587
Query: 490 FQVNDESQASRLISRHS 440
F ++ + + +S+H+
Sbjct: 1588 FSLDSSLRGKQRMSKHN 1604
>AB209153-1|BAD92390.1| 1332|Homo sapiens formin 2 variant protein.
Length = 1332
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/73 (31%), Positives = 27/73 (36%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L +I P P PG PL P A +
Sbjct: 532 PPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPP-----LPGAGIPLPPPLPGAGIP 586
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 587 PPPPLPGAGIPPP 599
Score = 30.3 bits (65), Expect = 8.6
Identities = 22/73 (30%), Positives = 26/73 (35%)
Frame = -1
Query: 712 PPFPXDFGYINPDHQIPGFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533
PP P I P +PG P P L + I P P PG P P A +
Sbjct: 686 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPP-----LPGAGIPPPPPLPGAGIP 740
Query: 532 PSSLGMXKGVSPP 494
P G+ PP
Sbjct: 741 PPPPLPGAGIPPP 753
>AB025194-1|BAB19280.1| 1636|Homo sapiens protein tyrosine phosphatase
HD-PTP protein.
Length = 1636
Score = 30.3 bits (65), Expect = 8.6
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 667 IPGFHTPTTPDLTSISINPLT-PY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 491
+P P + + S S PL+ P + P +PP+ EAPS+ SSL + ++P
Sbjct: 1529 LPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVP-EAPSSGPPSSSLELLASLTPEA 1587
Query: 490 FQVNDESQASRLISRHS 440
F ++ + + +S+H+
Sbjct: 1588 FSLDSSLRGKQRMSKHN 1604
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,293,543
Number of Sequences: 237096
Number of extensions: 2381183
Number of successful extensions: 5667
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5607
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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