Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_J14
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.040
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.20
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.26
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.35
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Frame = +2
Query: 626 PPXXXGXXXXXXXPPPPPP--XXXXXFFFXXXXXXPPPPPPP 745
PP G PPPPPP PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 28.3 bits (60), Expect(2) = 0.040
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 670 PPPSXXXXXXFFXXXXXXPPPPPPP 744
PPPS PPPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 0.040
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 727 PPPPPPP 747
PPPPPPP
Sbjct: 337 PPPPPPP 343
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.20
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 620 PPPPXXXGXXXXXXXPPPPPPXXXXXFFFXXXXXXPPPPPPPXXXXG 760
PPP G PPPPPP PPPPPPP G
Sbjct: 752 PPPAPIMGGPP----PPPPPPGVAGA------GPPPPPPPPPAVSAG 788
Score = 29.1 bits (62), Expect = 0.80
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +3
Query: 621 PPPPXXGGXXXXXXXPPPPLXXXXXXFFXXXXXXPPPPPPPP 746
PP P GG PPPP PPPPPPPP
Sbjct: 753 PPAPIMGGPPPP---PPPP---------GVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 620 PPPPXXXGXXXXXXXPPPPPPXXXXXFFFXXXXXXPPPPPPPXXXXG 760
PPPP P PPP PPPPPPP G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMG--------GPPPPPPPPGVAG 772
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 439 PPLFXXXXXGGGXPPPPPP 495
PP G G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Frame = +2
Query: 665 PPPPPPXXXXXFFFXXXXXXPPP------PPPPXXXXG 760
PPPPPP PPP PPPP G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 469 GGXPPPPPP 495
GG PPPPPP
Sbjct: 759 GGPPPPPPP 767
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.26
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 620 PPPPXXXGXXXXXXXPPPPPP 682
PPPP G PPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 29.9 bits (64), Expect = 0.46
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 665 PPPPPPXXXXXFFFXXXXXXPPPPPP 742
PPPPPP F PPPPPP
Sbjct: 9 PPPPPPPPG----FEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 620 PPPPXXXGXXXXXXXPPPPPP 682
PPPP PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 723 PPPPPPPP 746
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 673 PPSXXXXXXFFXXXXXXPPPPPPPP 747
PPS PPPPPPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 725 PPPPPPP 745
PPPPPPP
Sbjct: 238 PPPPPPP 244
Score = 21.4 bits (43), Expect(2) = 3.1
Identities = 8/20 (40%), Positives = 8/20 (40%)
Frame = +2
Query: 623 PPPXXXGXXXXXXXPPPPPP 682
PP PPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPP 243
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 723 PPPPPPPP 746
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 723 PPPPPPPP 746
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 469 GGXPPPPPP 495
GG PPPPPP
Sbjct: 303 GGLPPPPPP 311
Score = 23.4 bits (48), Expect(2) = 3.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 465 GGGXXPPPPPP 497
GG PPPPPP
Sbjct: 303 GGLPPPPPPPP 313
Score = 21.8 bits (44), Expect(2) = 3.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3
Query: 480 PPPPPPXXFFF 512
PPPPPP F+
Sbjct: 309 PPPPPPSNDFW 319
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 723 PPPPPPPP 746
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 723 PPPPPPPP 746
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 723 PPPPPPPP 746
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 723 PPPPPPPP 746
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 724 PPPPPPPP 747
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = -3
Query: 744 GGGGGGGXXXXXXKKXXXXXXGGGGGGXXXXXXXPXXXGGG 622
G GG GG + GG GGG P GGG
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,412
Number of Sequences: 5004
Number of extensions: 26585
Number of successful extensions: 485
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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