Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_J13
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    37   0.022
02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.6  
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    29   5.9  
06_03_1326 - 29355467-29355817                                         28   7.8  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 25/100 (25%), Positives = 29/100 (29%)
 Frame = +3

Query: 312 PXVQKTGAGXXPPTKXXLVXXKTPPGXXGXGGPPXFFKXXXGXXXPPQNRXXXXXXXXXX 491
           P  Q+   G  PP +        PP     G PP           PPQ +          
Sbjct: 31  PPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYY 90

Query: 492 XXPPXKKXXRXXXXRXXXPXXXPPXXPXPXXXSPXXPPPP 611
             PP              P   PP  P P   +P  PPPP
Sbjct: 91  QPPPPPP---PYGVNSSQPPPPPPPPPSPPPSAPPPPPPP 127


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/80 (25%), Positives = 21/80 (26%), Gaps = 3/80 (3%)
 Frame = +3

Query: 381 PPGXXGXGGPPXFFKXXXGXXXPPQNRXXXXXXXXXXXXPPXKKXXRXXXXRXXXPXXX- 557
           PPG      P            PP               PP K        +   P    
Sbjct: 291 PPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPA 350

Query: 558 --PPXXPXPXXXSPXXPPPP 611
             PP  P P   SP  PPPP
Sbjct: 351 KGPPPPPPPKGPSPPPPPPP 370


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 546 PXXXPPXXPXPXXXSPXXPPPPXXXXXXAXXP 641
           P   PP  P P    P  PPPP      A  P
Sbjct: 356 PPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPP 387


>06_03_1326 - 29355467-29355817
          Length = 116

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = -3

Query: 720 GAGXXXXXSXXXGGGXERGGXEGXXRXXXXRXXAXXXGGXXXXXXXGXXXGXGGG 556
           G+G         GGG  +GG EG              GG       G   G GGG
Sbjct: 28  GSGGGGRSGGGGGGGGGKGGGEGGSGKYGGGYSGGHAGGGGGAGKSGGYHGGGGG 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,424,766
Number of Sequences: 37544
Number of extensions: 230036
Number of successful extensions: 1139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)