Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_J09
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 28 1.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 2.4
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 27 2.4
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 5.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 5.4
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 7.2
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 7.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 9.5
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 25 9.5
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 665 SLRNKVTLYQNLYTPRHDVCKRSVRSRSPHQLEIPS 558
SL K+ YQ+LY+ D CK + SP LE+PS
Sbjct: 211 SLMPKILDYQHLYSKPCDFCKSLI---SPVYLELPS 243
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 469 SFSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRR 335
SF +L A + ++ AA +N + ++ N+I +R++NRR +
Sbjct: 1253 SFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNRRTK 1297
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 299 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 174
N + RH SSS+ S + K STS+L SP S P L
Sbjct: 14 NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = -3
Query: 395 RSRW*LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 216
+S W T + G +S + + S G + SPS+S+PS A+ S S+
Sbjct: 21 KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80
Query: 215 THRHS 201
+ +
Sbjct: 81 VRKEA 85
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 5.4
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = -3
Query: 398 HRSRW*LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPS--LATKGST 225
H+S+ H + S PN + + P R S+ G+ + + S + S L +K
Sbjct: 179 HKSQSYQHLKNSPPNSRTARKPVPRRANSASHNLGSTKSPNGNAKESLSRSAELPSKAKP 238
Query: 224 SELT--HRHSPLSFSPDLLSGSRFRSGG 147
E+ +R P SP+ S R R GG
Sbjct: 239 MEINNGYRKKPSPLSPN--SSIRNREGG 264
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 350 KPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLS 192
KPS +R G S ++ A K S S P + T +++ +HSP+S
Sbjct: 24 KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 211 WVSSLVEPFVASDGFDEDGDRCLWCLK 291
W P VA D DEDG +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 331 KHVITDPPDPLTVLLGTTSTGH 266
+H++ +PP PLTVL GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 302 INGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSP 183
+NG +HH +R +SS L++ GS +E + H P + P
Sbjct: 664 VNGNSQHHHNRDDASS--GLSSNGSENE-SLEHEPTNELP 700
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 674 SKLSLRNKVTLYQNLYTPRHDVCKRSVRSRSP 579
S+ S + KVT+ +N+ P H R+ + SP
Sbjct: 307 SQGSHQTKVTIEENMEAPSHQAANRTTLTDSP 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,041
Number of Sequences: 5004
Number of extensions: 57758
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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