Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_J06
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   3.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.2  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   7.2  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    25   9.5  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   9.5  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   9.5  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    25   9.5  

>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 261 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 121
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 332 KHVISDPPDPLTVLLGNSSTGH 267
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -3

Query: 442 PCATSIKRHDMRTLSSWPPVTTFPILRTEWKAVDVAQNTSSRT 314
           P    I+   ++ + S PPVT    ++  WKA+D+ ++ + ++
Sbjct: 43  PINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDLNKDDAVKS 85


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +2

Query: 236 FVASDGFDENGDRCLNYLKAPLVDRAGPR*RVLGDVDCFPFCPQDRECSYRRP 394
           F+   G     D  +  L      R+    R+   + CFP+  QD++   R P
Sbjct: 56  FILQTGCGSINDHLMELLIMINACRSASARRITAIIPCFPYARQDKKDKSRAP 108


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 600 YTCIGHDGAYASFVECXLISKGHFTSP 680
           Y  +G DG Y S  EC   S+  FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -2

Query: 599 VFAHAARTHLKSFQIIQSRFCRIAVGAPWFVRNVDLHD---DLDLESISKYLQSASMRH 432
           ++     +HL+ F + + +   +   A  F+ N D  D   +L L   ++ ++S  +RH
Sbjct: 227 IYGPRVASHLRDFSLGEGQSSIVGFSANGFISNADFQDKKSNLILFINNRLVESVELRH 285


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = -1

Query: 345 STSPKTRHLGPARSTNGAFR*FKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 166
           +T+P  R +    STN      K  S      SL   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 165 RFRSGGRFC 139
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,533
Number of Sequences: 5004
Number of extensions: 57106
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)