Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_J03
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 53 4e-08
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 37 0.004
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 37 0.004
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 36 0.009
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.015
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.015
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 4.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 4.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 5.4
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 7.1
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.1
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 7.1
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 53.2 bits (122), Expect = 4e-08
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = -2
Query: 506 CYNCNKSGHISRNC--PDGTKTCYVCGKPGHVSRECDEARN 390
CYNCN++GH + C P KTCY CG GH+ R+C + N
Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPN 78
Score = 50.4 bits (115), Expect = 3e-07
Identities = 23/47 (48%), Positives = 26/47 (55%)
Frame = -2
Query: 536 RGGGSLRPQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHVSRECDEA 396
R GG CY C GH +R+C G K CY CGK GH S EC +A
Sbjct: 108 RFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 545 TVPRGGGSLRP-QTCYNCNKSGHISRNCPDGTKTCYVCGKPGHVSRECDE 399
+VP + RP CYNC ++GH +R C G+ CY C + GH + EC E
Sbjct: 5 SVPTVPQTTRPGPRCYNCGENGHQARECTKGS-ICYNCNQTGHKASECTE 53
Score = 47.2 bits (107), Expect = 3e-06
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = -2
Query: 512 QTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHVSREC 405
+TCY C +GH+ R+CP CY CG+ GH++R+C
Sbjct: 58 KTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -1
Query: 627 GHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES 520
GH+ R+C SP+ CY C + GHIAR+C G++S
Sbjct: 67 GHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQS 105
Score = 41.5 bits (93), Expect = 1e-04
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 627 GHIARECAQSPDEPSCYNCNKTGHIARNCP 538
GH A EC + E +CY C GH+ R+CP
Sbjct: 45 GHKASECTEPQQEKTCYACGTAGHLVRDCP 74
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -1
Query: 627 GHIARECAQSPDEPSCYNCNKTGHIARNC 541
GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 144 GHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 41.1 bits (92), Expect = 2e-04
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 506 CYNCNKSGHISRNCPDGT--KTCYVCGKPGHVSREC 405
CY+C K GH S C + + CY C +PGH++ C
Sbjct: 137 CYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = -1
Query: 627 GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE 523
GH AREC + CYNCN+TGH A C E +E
Sbjct: 26 GHQARECTKGS---ICYNCNQTGHKASECTEPQQE 57
Score = 33.5 bits (73), Expect = 0.035
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 588 PSCYNCNKTGHIARNCPEG 532
P CYNC + GH AR C +G
Sbjct: 17 PRCYNCGENGHQARECTKG 35
Score = 30.7 bits (66), Expect = 0.25
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 512 QTCYNCNKSGHISRNC 465
Q CY CN+ GHI+ NC
Sbjct: 157 QLCYKCNQPGHIAVNC 172
Score = 29.5 bits (63), Expect = 0.57
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 627 GHIARECAQSPDEPSCYNCNKTGHIARNCPE 535
GH AR+C CY+C K GH + C +
Sbjct: 125 GHQARDCTMGV---KCYSCGKIGHRSFECQQ 152
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Frame = -1
Query: 627 GHIARECAQSPDEP-----------SCYNCNKTGHIARNCPEG 532
GHIAR+C + + +CY C GH AR+C G
Sbjct: 92 GHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -2
Query: 518 RPQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHVSRECDE 399
R + C+ C + GHI ++CP D C+ CG H C +
Sbjct: 75 RDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSK 117
Score = 29.5 bits (63), Expect = 0.57
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = -2
Query: 506 CYNCNKSGHISRNC----PDGTKTCYVCGKPGHVSRECDE 399
C+ C H C P C++C + GH+S +C++
Sbjct: 102 CFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQ 141
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 615 RECAQSPDEPSCYNCNKTGHIARNCPE 535
R Q + C+ C + GHI ++CPE
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPE 94
Score = 28.3 bits (60), Expect = 1.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 452 KTCYVCGKPGHVSRECDEARN 390
K C+ C + GH+ ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -1
Query: 627 GHIARECAQSPDE--PS---CYNCNKTGHIARNCPEGGRESAT 514
GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -2
Query: 512 QTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHVSRECDEARN*PQPP 375
Q C NC GH +CP+ C CG GH++R+C R+ QPP
Sbjct: 309 QVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 582 CYNCNKTGHIARNCPEGGRESATAD 508
C +C GHIAR+CP ++ AD
Sbjct: 336 CRHCGSIGHIARDCPVRDQQPPMAD 360
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 35.5 bits (78), Expect = 0.009
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 506 CYNCNKSGHISRNCPDGTKTCYVCGK-PGHVSREC 405
C+NC +GHIS++CP C CG H+S C
Sbjct: 89 CHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 506 CYNCNK-SGHISRNCPDGTKTCYVCGKPGHVSRECDEAR 393
C C HIS CP TK C CG GH++ C E R
Sbjct: 107 CTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARCSEPR 144
Score = 30.7 bits (66), Expect = 0.25
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Frame = -2
Query: 506 CYNCNKSGHISRNCPD----GTKTCYVCGKPGHVSREC 405
C NC GHI+ C + G + C C H S C
Sbjct: 127 CMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 29.1 bits (62), Expect = 0.76
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 582 CYNCNKTGHIARNCP 538
C+NC GHI+++CP
Sbjct: 89 CHNCKGNGHISKDCP 103
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 624 HIARECAQSPDEPSCYNCNKTGHIARNCPE 535
HI+ C P C NC GHIA C E
Sbjct: 116 HISVRC---PWTKKCMNCGLLGHIAARCSE 142
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.015
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 482 HISRNCPDGTKTCYVCGKPGHVSREC 405
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 521 LRPQTCYNCNKSGHISRNC 465
+R TCY C K+ H R C
Sbjct: 1801 VRLSTCYKCGKADHNLREC 1819
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = -1
Query: 642 DVTARGHIARECAQSPDEPSCYNCNKTGHIARNC 541
D R H + C +CY C K H R C
Sbjct: 1788 DTEIRAHTGKACPVRLS--TCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.015
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 482 HISRNCPDGTKTCYVCGKPGHVSREC 405
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 521 LRPQTCYNCNKSGHISRNC 465
+R TCY C K+ H R C
Sbjct: 1801 VRLSTCYKCGKADHNLREC 1819
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = -1
Query: 642 DVTARGHIARECAQSPDEPSCYNCNKTGHIARNC 541
D R H + C +CY C K H R C
Sbjct: 1788 DTEIRAHTGKACPVRLS--TCYKCGKADHNLREC 1819
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -2
Query: 509 TCYNCN-KSGHISRNCPDGTKTCYVCG 432
TC NC ++ + R PDG C CG
Sbjct: 634 TCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 603 QSPDEPSCYNCNKTGHIARN--CPEGGR-ESATADLL 502
+ P C NC + GH+ N CP GR E A +L
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGRPEGGLATML 976
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = -1
Query: 615 RECAQSPDEPS-----CYNCNKTGHIARNCP 538
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 506 CYNCNKSGHISRNCPDGTKTCYVCGKP 426
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 221 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 319
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 602 CAHSRAMCPRAVTSAATVSLFL-AIPRKVSVXVALEXLLTL 721
C + R + +A T+AAT+SLF P K+ + ++ + T+
Sbjct: 262 CENIRILGFKAETNAATISLFAPKTPEKLQITLSSSDVFTI 302
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 182 KNKHERASTRPSIYKSTVEPHSS 250
K+KH S+ YK+ VEPH S
Sbjct: 16 KSKHASKSSLKEKYKNEVEPHRS 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,240
Number of Sequences: 5004
Number of extensions: 47283
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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