Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_I24
(920 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 31 1.3
07_03_1136 + 24218601-24218734,24218769-24219906 29 3.9
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 3.9
06_03_1153 - 28047125-28047751 29 6.9
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 29 6.9
01_03_0005 + 11568545-11569119,11569179-11569191 29 6.9
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 28 9.1
05_06_0281 + 26912419-26913099 28 9.1
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +1
Query: 388 GGGXKXXGGGGXPPPTXXFFFXEKXP--GXGGXGGGAXA 498
GG GGGG PP P G GG GGGA A
Sbjct: 77 GGAASNNGGGGSAPPPGNLAGSGTPPAKGSGGDGGGAPA 115
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 3.9
Identities = 31/94 (32%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Frame = +1
Query: 217 PRXPGGFXPPGXWGXEXXXXLLNF*KGXXFGGGFXXP*KNPPPPXXXXKXXXKXXKRGGG 396
P GG PPG G L G GGG PP P GGG
Sbjct: 100 PLGGGGARPPGGGGGGGPPSLP---PGAGGGGG-----ARPPAPGGGGGGGAPRRVLGGG 151
Query: 397 XKXXGGGGX---PPPTXXFFFXEKXPGXGGXGGG 489
GGGG PP + PG GG GGG
Sbjct: 152 ----GGGGALARPPGGGRGGALGRPPGGGGGGGG 181
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 385 RGGGXKXXGGGGXPPPTXXFFFXEKXPGXGGXGGG 489
RGGG GGGG PP + G GG GGG
Sbjct: 55 RGGGYGGGGGGGGPP------YYGGGGGGGGGGGG 83
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 425 GXPPPPXXFXPPPL 384
G PPPP F PPPL
Sbjct: 7 GAPPPPAIFCPPPL 20
>03_06_0448 -
34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 425 GXPPPPXXFXPPPL 384
G PPPP F PPPL
Sbjct: 38 GAPPPPPPFRPPPL 51
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 6.9
Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +1
Query: 295 GXXFGGGFXXP*KNPPPPXXXXKXXXKXXKRGGGXKXXGGGGX--PPPTXXFFFXEKXPG 468
G GGG +PPPP GGG GGGG PPPT G
Sbjct: 79 GGGGGGGGTVMYTSPPPPYSG----------GGGGSSTGGGGIYYPPPTG---------G 119
Query: 469 XGGXGGG 489
GG GGG
Sbjct: 120 GGGGGGG 126
>10_08_0343 -
16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +1
Query: 385 RGGGXKXXGGGGXPPPTXXFFFXEKXPGXGGXGGG 489
RGGG GGGG P G GG GGG
Sbjct: 849 RGGGGGRRGGGGGPNSQRGRGRGGGGAGRGGGGGG 883
>05_06_0281 + 26912419-26913099
Length = 226
Score = 28.3 bits (60), Expect = 9.1
Identities = 22/74 (29%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = +1
Query: 220 RXPGGFXPPGXW--GXEXXXXLLNF*KGXXFGGGFXXP*KNPPPPXXXXKXXXKXXKRGG 393
R PGG PP W G L G GG P PPP + G
Sbjct: 112 RRPGGPTPPSPWHPGVPTQTQLAGGDDGGV-GGLLGRPWPKAPPPPDPNTPPVQPLSNYG 170
Query: 394 GXKXXGGGGXPPPT 435
+ G G PPT
Sbjct: 171 VSRCCGRPGPAPPT 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,196,737
Number of Sequences: 37544
Number of extensions: 439627
Number of successful extensions: 2592
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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