Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_I24
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific ...    33   0.29 
Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical pr...    31   0.88 
U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific ...    31   0.88 
U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific...    29   3.5  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    29   4.7  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    29   4.7  

>U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific
           family, class qprotein 2 protein.
          Length = 405

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 388 GGGXKXXGGGGXPPPTXXFFFXEKXPGXGGXGGGA 492
           GGG    GGG  PPP    +      G GG GGGA
Sbjct: 31  GGGASKVGGGAAPPPGTSVYM---GAGGGGGGGGA 62


>Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical
           protein K07F5.11 protein.
          Length = 290

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 388 GGGXKXXGGGGXPPPTXXFFFXEKXPGXGGXGGG 489
           GGG    GG G PPP    +      G GG GGG
Sbjct: 31  GGGASKVGGAGAPPPGTSVYM---GAGAGGGGGG 61


>U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific
           family, class qprotein 4 protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 388 GGGXKXXGGGGXPPPTXXFFFXEKXPGXGGXGGGA 492
           GGG    GGGG   P    +      G GG GGGA
Sbjct: 331 GGGGAKSGGGGGGIPGQSVYMGAGGGGGGGGGGGA 365



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 388 GGGXKXXGGGGXPPPTXXFFFXEKXPGXGGXGGGA 492
           GGG K  GGGG PPP    +      G GG   G+
Sbjct: 31  GGGNKSAGGGGAPPPGVSCYL---GAGAGGAASGS 62



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 387 GGGXKXXGGGGXPPP 431
           GGG K  GGGG PPP
Sbjct: 31  GGGNKSAGGGGAPPP 45


>U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific
           family, class qprotein 3 protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 388 GGGXKXXGGGGXPPPTXXFFFXEKXPGXGGXGGGA 492
           GGG K  GGGG  P    +       G GG GGGA
Sbjct: 226 GGGAKSGGGGGGIPGQSVYM---GAGGGGGGGGGA 257


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +1

Query: 373 KXXKRGGGXKXXGGGGXPPPTXXFFFXEKXPGXGGXGG 486
           K  + GGG    GGGG PP         + PG GG GG
Sbjct: 610 KNNQAGGGPGGPGGGGGPP---------RGPGGGGGGG 638


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +1

Query: 373 KXXKRGGGXKXXGGGGXPPPTXXFFFXEKXPGXGGXGG 486
           K  + GGG    GGGG PP         + PG GG GG
Sbjct: 610 KNNQAGGGPGGPGGGGGPP---------RGPGGGGGGG 638


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,806,006
Number of Sequences: 27780
Number of extensions: 237426
Number of successful extensions: 916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)