Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_I21
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 33 0.35
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.35
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
08_01_0443 + 3930381-3930908 29 3.3
07_03_1086 + 23858419-23859423,23859527-23859610 29 3.3
07_03_0846 - 21983581-21986055 29 3.3
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 29 4.4
01_06_0695 - 31292622-31293317 28 7.6
01_01_1235 - 10017728-10017766,10018891-10019352 28 7.6
>04_04_0179 -
23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 32.7 bits (71), Expect = 0.35
Identities = 27/69 (39%), Positives = 34/69 (49%)
Frame = -2
Query: 367 ASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSAFFL 188
+SK EA +S D T E R S KQ F S +S RE +SP +R LSA F
Sbjct: 728 SSKPEAG-QDSSVDTCTSEIRSSSSGKQRRFRSPLS--VRELDEKSPVINRELYLSAKFK 784
Query: 187 TRASRLRRS 161
T + +R S
Sbjct: 785 TPSPPVRSS 793
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 84 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKADSID 212
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 352 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 218
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>08_01_0443 + 3930381-3930908
Length = 175
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/83 (24%), Positives = 31/83 (37%)
Frame = -2
Query: 424 ALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRE 245
AL R A PS + +A + ++ + E G + + + S
Sbjct: 90 ALHRGAASPSRPSVAAACGGLREDARRSAMANSLVRIAAVEGGDHVRRAVAALIRPSSHH 149
Query: 244 TRRRSPFGSRRSMLSAFFLTRAS 176
RRR+ F R S LSA A+
Sbjct: 150 QRRRAAFRPRPSRLSAMSAAAAA 172
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 29.5 bits (63), Expect = 3.3
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Frame = -2
Query: 583 KFAKRWIVHPSKGNVSWA*TVVRQVSFTLLMACR-CDSNTAQYERNRSFGHLVHALGRAA 407
+ A V P +S A ++++ T L+ CD N A + LVHAL AA
Sbjct: 100 RIAAAGAVRPLVALLSHADPLLQEHGVTALLNLSICDENKAIIVEAGAIRPLVHALKSAA 159
Query: 406 GGAKLPSAGLCLNA-----SKAEASLAESGKDMLTVEPRESGGSK 287
A +A L A AS+ +G L V E+GG++
Sbjct: 160 SPAARENAACALLRLSQLDGSAAASIGRAGAIPLLVSLLETGGAR 204
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 210 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 359
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 439 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 341
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 361 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSAFFL 188
K+ AS A G D P R GG K+ S + SKR + R + F +L + L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 187 TRASR 173
TRA+R
Sbjct: 64 TRAAR 68
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +3
Query: 36 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 170
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>01_01_1235 - 10017728-10017766,10018891-10019352
Length = 166
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = -2
Query: 418 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSHS 254
G GGA + + L+A+ L G + L + PR S + TS + S
Sbjct: 66 GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125
Query: 253 KRETRRRSPFGSRRSMLSAF 194
K + RSPF SRRS F
Sbjct: 126 KAASSSRSPFASRRSKHEGF 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,355,910
Number of Sequences: 37544
Number of extensions: 483705
Number of successful extensions: 1345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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