Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_I19
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.33 
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    32   0.44 
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848...    29   3.1  
07_03_0626 + 20060013-20060273,20061017-20061274                       29   5.4  
01_06_0695 - 31292622-31293317                                         28   7.2  
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060...    28   9.5  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 82  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 210
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>02_05_0717 +
           31190626-31191234,31191954-31192394,31192699-31192802,
           31193000-31194384,31194508-31194548,31195065-31195133,
           31195335-31195435,31195747-31195825,31195939-31196037,
           31196119-31196187,31197609-31197658,31197749-31197925,
           31198045-31198152,31198224-31198290
          Length = 1132

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 145 TELYPDLRSRDARVKKKTDSIDLRDPNGLCDVACSRFECETRLVKSHCLE--PPDSRGST 318
           TE      S +    K  D   L   N L + ACS FECE    +S  +   P DS G+T
Sbjct: 408 TEFEESSFSNNHHFNKDNDIRQLGSSNSLSNSACSSFECELLDRRSTWINVGPSDSDGAT 467

Query: 319 VS 324
            S
Sbjct: 468 TS 469


>02_04_0179 +
           20682852-20684510,20684593-20684661,20684741-20684809,
           20686779-20688206
          Length = 1074

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +1

Query: 22  SDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 201
           +DESP A  S  R       PS   RQ++++  D    R + E  P        V K   
Sbjct: 495 ADESPSAPPSPTRKLSKVKTPSQQDRQQKEAKED----RQQKEPNPTGTPSKIAVSKLEG 550

Query: 202 SIDLRDPNGL---CDVACSRFECETRLVKSHCLEPP 300
               + PN      ++A SR E ET+  K + +  P
Sbjct: 551 ETTQKKPNPTGTPSEMAVSRLEGETKQKKPNPIGMP 586


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 341 RLGWLRPXRRSGIIP 385
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 34  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 168
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


>08_02_0104 +
           12404890-12405129,12405244-12405333,12405953-12406036,
           12406888-12407132,12409032-12409095,12409270-12409968,
           12410063-12410176,12410287-12410418,12410594-12410770,
           12411085-12411138,12411230-12411292,12411396-12412307,
           12412408-12412535,12413680-12413962
          Length = 1094

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +1

Query: 28  ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 207
           +SPG  L   R  HD +L         KSST  +  R   E      SR     +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790

Query: 208 D 210
           +
Sbjct: 791 E 791


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,618
Number of Sequences: 37544
Number of extensions: 321884
Number of successful extensions: 785
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)