Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_I19
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical protein
            F54F2.1 protein.
          Length = 1226

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 91   TPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLCDVACSRFEC 261
            TP++++K      EPR     + DLR      K+    +D + P     V C+   C
Sbjct: 1018 TPKKKKKGGEHRGEPRSDKARFSDLREAVKLSKEAGGVVDYKGPLSRASVDCNSLRC 1074


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 308 RESGGSKQCDFTSRVSHSKREHATSQSPFGSRRSMLSV 195
           R S G++ C +   V H+ +EH+      G RR ++SV
Sbjct: 102 RLSTGAEVCAYIPNVGHNLQEHSQVLVKGGRRRDLISV 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,461,491
Number of Sequences: 27780
Number of extensions: 257420
Number of successful extensions: 602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)