Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_I17
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 523 PPPPPXXXGGGGGPP 567
           PPPPP    G G PP
Sbjct: 763 PPPPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 523 PPPPPXXXGGGGGPP 567
           PPPPP     G GPP
Sbjct: 762 PPPPPPPGVAGAGPP 776



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 523 PPPPPXXXGGGGGPP 567
           PPPPP   G G  PP
Sbjct: 764 PPPPPGVAGAGPPPP 778



 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 491 PPXFXXXXXXXPPPPPXXXGGGGGP 565
           PP         PPPPP    G G P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 22.6 bits (46), Expect(2) = 7.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 561 PPPPPXXXGGGGGXF 517
           PPPPP     GG  +
Sbjct: 778 PPPPPPAVSAGGSRY 792



 Score = 21.0 bits (42), Expect(2) = 7.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 585 PXXXXXXGPPPPP 547
           P      GPPPPP
Sbjct: 767 PPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,618
Number of Sequences: 5004
Number of extensions: 17446
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)