Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_I13
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical...    29   5.0  
AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical...    29   5.0  

>AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24b protein.
          Length = 1127

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -2

Query: 342 ASLAESGKDMLTVEPRESGGSKQCDFT---SRVSHSKRETGRRSPFGSRRSMLSVFFLTR 172
           A  +++  D L++ PR  G  K  DF+   SR  +     G+ SP  S  S++S+  LTR
Sbjct: 111 AMRSDAESDTLSLSPRSFGSGKTSDFSAWFSRKLNGILGDGKASP-DSTSSVVSI--LTR 167

Query: 171 ASRLRRSGY 145
                 SGY
Sbjct: 168 TLSKATSGY 176


>AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24a protein.
          Length = 1161

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -2

Query: 342 ASLAESGKDMLTVEPRESGGSKQCDFT---SRVSHSKRETGRRSPFGSRRSMLSVFFLTR 172
           A  +++  D L++ PR  G  K  DF+   SR  +     G+ SP  S  S++S+  LTR
Sbjct: 111 AMRSDAESDTLSLSPRSFGSGKTSDFSAWFSRKLNGILGDGKASP-DSTSSVVSI--LTR 167

Query: 171 ASRLRRSGY 145
                 SGY
Sbjct: 168 TLSKATSGY 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,237,892
Number of Sequences: 27780
Number of extensions: 387282
Number of successful extensions: 1080
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)