Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_I07
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.28
12_02_1174 - 26696869-26698191 30 2.0
02_02_0240 + 8196140-8198248,8198381-8198650 30 2.6
11_01_0133 + 1121392-1122731,1123417-1123858 29 3.5
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 4.6
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 6.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.0
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 28 8.0
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 8.0
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 571 PPXPPAXPXAXXFXPGAXSPXXTSRXXXPPXXPP 672
PP PPA P A P A SP PP PP
Sbjct: 321 PPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPP 354
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 559 PSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPPXXPP 672
PS PP P P + P A +P ++ PP PP
Sbjct: 265 PSPPPPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPP 302
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 547 PRXSPSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPPXXPP 672
P+ PS PP PP P P P + PP P
Sbjct: 146 PQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQP 187
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +1
Query: 547 PRXSPSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPPXXPP 672
P+ PS PP PP P P P + PP PP
Sbjct: 179 PQPPPSLQPPSPPPPPPTRP--PSVKPPVVQPKPQPPPTLPP 218
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +1
Query: 541 GXPRXSPSRXPPXPPAXPXAXXF--XPGAXSPXXTSRXXXPPXXPP 672
G P P+ PP PP P PG+ P T+ PP P
Sbjct: 583 GVPHMMPTMHPPPPPPIPGQPQVIRMPGSMGPMPTNIPPPPPGQNP 628
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 559 PSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPPXXPP 672
P+ PP PP+ P A P TS PP PP
Sbjct: 132 PAPPPPPPPSHPALLPPDATAPPPPPTSVAALPPPPPP 169
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 547 PRXSPSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPPXXPP 672
P+ P PP PP P P P + PP PP
Sbjct: 349 PKLMPPPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPP 390
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +1
Query: 541 GXPRXSPSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPPXXPP 672
G PS PP PP P P + P S PP PP
Sbjct: 194 GTEEAGPSTLPPPPPPPP-----LPASSEPVDPSAASLPPLPPP 232
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +1
Query: 547 PRXSPSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPPXXP 669
P PS PP PP P P +P R PP P
Sbjct: 350 PPPQPSHLPPLPPRPPTMPSMQPDMLAP-GVPRFPPPPPPP 389
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 556 SPSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPPXXPP 672
SP PP PP P P P + PP PP
Sbjct: 601 SPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPP 639
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 550 RXSPSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPP 660
R SPS PP PP P A P P + P
Sbjct: 42 RPSPSIPPPPPPQRPPAATVAPSVPDPSPSGHVTIRP 78
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 547 PRXSPSRXPPXPPAXPXAXXFXPGAXSPXXTSRXXXPP 660
P SP PP PP+ P A P SP PP
Sbjct: 1150 PSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPP 1187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,012,186
Number of Sequences: 37544
Number of extensions: 175982
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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