Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_I04
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   203   3e-53
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   203   3e-53
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.58 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.2  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   7.2  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   7.2  
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.5  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  203 bits (495), Expect = 3e-53
 Identities = 100/161 (62%), Positives = 119/161 (73%)
 Frame = -1

Query: 590 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 411
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 410 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMEPKKRIITLRKSLRVH 231
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G    P KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 230 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 30/74 (40%), Positives = 44/74 (59%)
 Frame = -3

Query: 774 ATKEGSHYGIQLNGGTIEDKVKWXREHXENLSLSILCLPKMK*LTALVSPKXKGYKGVTS 595
           A K+     IQ+NGG++ DKV+W REH E          + + +  +   + KG +G T+
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 594 RWHTKKLPRKTHQG 553
           RW TK+LPRKTH+G
Sbjct: 232 RWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  203 bits (495), Expect = 3e-53
 Identities = 100/161 (62%), Positives = 119/161 (73%)
 Frame = -1

Query: 590 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 411
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 410 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMEPKKRIITLRKSLRVH 231
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G    P KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 230 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 30/74 (40%), Positives = 44/74 (59%)
 Frame = -3

Query: 774 ATKEGSHYGIQLNGGTIEDKVKWXREHXENLSLSILCLPKMK*LTALVSPKXKGYKGVTS 595
           A K+     IQ+NGG++ DKV+W REH E          + + +  +   + KG +G T+
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 594 RWHTKKLPRKTHQG 553
           RW TK+LPRKTH+G
Sbjct: 232 RWGTKRLPRKTHRG 245


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 399 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKXLGVSYGVA 578
           NFA+L+  SL ++ +F++H +T    +   T+Y   +   +  +N  N  K   + + + 
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432

Query: 579 SLCANEK 599
           SL AN +
Sbjct: 433 SLPANSR 439


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 488
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 351 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 479
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +2

Query: 557 WCVLRGSFFVCQREVTPLYPLXLGDTNAVNHFILGKHRIDRDRFSXCSLXHFTLSSMVPP 736
           W +L    F  QR+ + L    LGD+  +   IL    ID       +L     S   PP
Sbjct: 107 WSLLDSMDFDNQRQCSDLESAQLGDSGLLKSTILSNSHID-----IAALSSSKTSEPTPP 161

Query: 737 LSWI 748
            S++
Sbjct: 162 FSYV 165


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 726 IEDKVKWXREHXENLSLSILCLP 658
           IE  + W +E+ +    S+LCLP
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLP 358


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 268 FLGSMQQPLIITKSLFTSP 324
           FL + Q+PLIITK  +++P
Sbjct: 13  FLKNPQKPLIITKRFYSTP 31


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 411 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 536
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,538
Number of Sequences: 5004
Number of extensions: 70279
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)