Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_I04
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   214   6e-56
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   207   9e-54
07_01_0761 + 5849466-5850677                                           31   1.4  
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    28   7.5  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  214 bits (523), Expect = 6e-56
 Identities = 101/153 (66%), Positives = 119/153 (77%)
 Frame = -1

Query: 572 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
           P +  + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG     K G+   
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295

Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMEPKKRIITLRKSLRVHTKRAAL 213
           + A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+ PKKR++TLR+SL   T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355

Query: 212 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           E+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 27/65 (41%), Positives = 37/65 (56%)
 Frame = -3

Query: 747 IQLNGGTIEDKVKWXREHXENLSLSILCLPKMK*LTALVSPKXKGYKGVTSRWHTKKLPR 568
           IQ+NGGTI DKV +  +  E          K + +  +   K KGY+GV +RW   +LPR
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243

Query: 567 KTHQG 553
           KTH+G
Sbjct: 244 KTHRG 248


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  207 bits (505), Expect = 9e-54
 Identities = 97/145 (66%), Positives = 115/145 (79%)
 Frame = -1

Query: 572 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
           P +  + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG     K G+   
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295

Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMEPKKRIITLRKSLRVHTKRAAL 213
           + A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+ PKKR++TLR+SL   T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355

Query: 212 EKINLKFIDTSSKFGHGRFQTPADK 138
           E+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEK 380



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 27/65 (41%), Positives = 37/65 (56%)
 Frame = -3

Query: 747 IQLNGGTIEDKVKWXREHXENLSLSILCLPKMK*LTALVSPKXKGYKGVTSRWHTKKLPR 568
           IQ+NGGTI DKV +  +  E          K + +  +   K KGY+GV +RW   +LPR
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243

Query: 567 KTHQG 553
           KTH+G
Sbjct: 244 KTHRG 248


>07_01_0761 + 5849466-5850677
          Length = 403

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -1

Query: 605 VSLLVGTQRSYPVRHTKXLRKVACI--GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 432
           V+LLVG  R   V        V+ +  G  HP   SFT+ RA      H      K+ RI
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEH------KVLRI 182

Query: 431 GQGIH 417
           G  +H
Sbjct: 183 GTVVH 187


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = -1

Query: 515 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 366
           ++V F    +   GY H + +N ++  I  G          IH+ D   +      E  L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419

Query: 365 SEKSITPMGGFPHYGEVNN 309
           SEKS  P+  FP    V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,181,559
Number of Sequences: 37544
Number of extensions: 476745
Number of successful extensions: 1241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)