Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_I02
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    32   0.40 
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   1.6  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   1.6  
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    29   4.9  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    29   4.9  
AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -1

Query: 718 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLT 545
           P+P  + T+T  +NP   TPTT  + +I  +P  P          + P  S+ AP+A + 
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547

Query: 544 PSSLGMAEGVSP 509
           P+S   A  V P
Sbjct: 548 PTSPTTAPTVPP 559


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -1

Query: 730 ASSHPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SA 554
           +S +P+P I     R   PR     TP L  + I+P+     +F P + PP    +P  A
Sbjct: 510 SSCYPTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQA 566

Query: 553 YLTPSSLGMAEGVSPPYFQVNDESQASRLISR 458
              P++L      S P   V ++      ++R
Sbjct: 567 LFNPTNLYPTPPSSLPNTYVPNQESFDESVNR 598


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -1

Query: 730 ASSHPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SA 554
           +S +P+P I     R   PR     TP L  + I+P+     +F P + PP    +P  A
Sbjct: 510 SSCYPTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQA 566

Query: 553 YLTPSSLGMAEGVSPPYFQVNDESQASRLISR 458
              P++L      S P   V ++      ++R
Sbjct: 567 LFNPTNLYPTPPSSLPNTYVPNQESFDESVNR 598


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -1

Query: 718 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 539
           P+P  + T+T  +NP   TPTT   TS   N ++P+       +     + AP    +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548

Query: 538 SLGMAEGVSPP 506
           +       S P
Sbjct: 549 TTPTHTTASQP 559


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = -1

Query: 736  PYASSHP-SPAISXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSS 569
            P A   P SP+ S TS + S     ++PT+P    TS S +P +P     +P   P   S
Sbjct: 1601 PAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPS 1660

Query: 568  EAPSAYLTPSSLGMAEGVSPPY 503
             +PS+     S       SP Y
Sbjct: 1661 YSPSSPSYSPSSPRYSPTSPTY 1682


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = -1

Query: 736  PYASSHP-SPAISXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSS 569
            P A   P SP+ S TS + S     ++PT+P    TS S +P +P     +P   P   S
Sbjct: 1608 PAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPS 1667

Query: 568  EAPSAYLTPSSLGMAEGVSPPY 503
             +PS+     S       SP Y
Sbjct: 1668 YSPSSPSYSPSSPRYSPTSPTY 1689


>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 514 KPLQPCPVTRG*DTLMEPLMTTEALTPARTPSSTAS 621
           +P QP  VT       EP++++E L P R PS+T S
Sbjct: 862 RPSQP-HVTMPPKKSSEPILSSEVLQPTRLPSATTS 896


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
            protein 25, isoforma protein.
          Length = 1237

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 514  KPLQPCPVTRG*DTLMEPLMTTEALTPARTPSSTAS 621
            +P QP  VT       EP++++E L P R PS+T S
Sbjct: 969  RPSQP-HVTMPPKKSSEPILSSEVLQPTRLPSATTS 1003


>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -1

Query: 718 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 557
           P+   S ++  +  P   T  TP+LT++++ P+T   K     + P  +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 724 SHPSPAISXTSTRSSNPRFHTPTTPD-LTSISINPLTP 614
           S  SPAI  T+T +++P+  T  TP+ +T++    + P
Sbjct: 267 SSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -1

Query: 739 RPYASSHPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY 611
           RPY    P    +  S+ ++    + P  P  T    NP  PY
Sbjct: 172 RPYPPQQPPSTSAPHSSPNNRTSLYNPQPPPKTGYPTNPRVPY 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,441,641
Number of Sequences: 27780
Number of extensions: 347933
Number of successful extensions: 1214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)