Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H24
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0069 - 31449319-31450368                                         33   0.27 
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    31   0.82 
03_05_0183 - 21681673-21682524                                         29   4.4  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.4  
07_03_0414 + 17892133-17893590                                         28   7.6  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   7.6  

>03_06_0069 - 31449319-31450368
          Length = 349

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 669 VXSRPXVSSSGDVXKRSSPFKTPA*SGSRTL-PGGEFDWGGTSVKE*RRCPKASSARTE 496
           + S P  +SS     RSS   T   S S T  P G+   GG + +   RCP+ +S+ T+
Sbjct: 22  IVSNPSPTSSSSTSSRSSAQATQQRSSSATSSPHGQGQGGGAAEQAPLRCPRCNSSNTK 80


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -3

Query: 212 VRQVSFTLLMACRCDSDTAQYERNRSFGHLV-HALGRAA----GGAKL 84
           + +VS  L M C  DSD    E   +F H   HA GR A    GGA L
Sbjct: 195 IEEVSTQLKMVCNSDSDDLPLEEKLAFMHETRHAFGRTALLLSGGASL 242


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 343 SQAFIATLLFDPSMSALPIIAKQNSPS 263
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 404 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 297
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 123 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 299
           Q   + V + L S+T+ +       T   H GL+ A  PF WV  P + G    A +  A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334

Query: 300 DIEGSKSNVAMNAWLPQ 350
                KS   +  W PQ
Sbjct: 335 VAAAGKSKARVVEWAPQ 351


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 551 PPQSNSPPGSVLEPDHAGVLNGDE 622
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,867,203
Number of Sequences: 37544
Number of extensions: 382379
Number of successful extensions: 986
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)