Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H21
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.59 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   1.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.5  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    26   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   7.2  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   9.6  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +1

Query: 385 PATTQTTILRVPPLLHDVTPTLRNP---TANTCQARTSTHFTGKTCIRLRXPNTAASPDT 555
           P +T +T + +PP     T T  NP   T+ +C   TS   TG +   L  P T   P T
Sbjct: 140 PTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSS-SLSTPITPTVPPT 198

Query: 556 N 558
           +
Sbjct: 199 S 199


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 385  PATTQTTILRVPPLLHDVTPTLRNPTANTCQARTSTHFTGKTCIRLRXPNTAASP-DTNA 561
            P T+ T +   PP+          P  ++    TST  T  T +    P T+++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 562  P 564
            P
Sbjct: 1703 P 1703


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 286  LGGPQPRKSHLRLPVQTHKTFYHYANF 366
            +GG Q  K +L LP QT   FY    F
Sbjct: 3065 MGGNQVAKGYLNLPEQTDAKFYFDRRF 3091


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 324 TCADSQDILPLCKLLTATNLTSHHANYNFTG 416
           +C  + +   +C LL+ ++  SH   Y++TG
Sbjct: 498 SCVTTDEAFNVCDLLSISDCLSHDFPYSYTG 528


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 353  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GTQPRTLVKHAQART 496
            TM  + ++K     RKL+    HL +  L+ H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 303 AEVSPPATCADSQDILPLCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE-EPNREHLSS 479
           A  S   T  DS+ I        +T+  + H       + S  R  SH   EP R HLS 
Sbjct: 105 ANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSR 164

Query: 480 THKHA 494
            H+H+
Sbjct: 165 HHRHS 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,819
Number of Sequences: 5004
Number of extensions: 57156
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)