Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H21
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1120 - 26228618-26229403                                         30   1.9  
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142     30   1.9  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    30   1.9  
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462...    29   5.8  
01_01_1137 + 9017211-9018584                                           29   5.8  

>12_02_1120 - 26228618-26229403
          Length = 261

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 319 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRSRLQHELPILEPP 179
           GGE    AA P R   +   + T    R R+ +RS   H   ++ PP
Sbjct: 140 GGEVVQAAARPTRLTASSEAERTTTMARRRRRSRSHSSHHALMMTPP 186


>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
          Length = 534

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +1

Query: 283 GLGGPQPRKSHLRLPVQTHKTFYHYANFLPQQILPATTQTTILRVPPLLHDVTPTLRNPT 462
           GL    P K         H+ F    +FLP +I         L+VPP LH V P    P 
Sbjct: 57  GLLSFDPEKRLTAAEAMEHRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPP 116

Query: 463 AN 468
           A+
Sbjct: 117 AS 118


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 387 SHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHAL--HRKNLHP 518
           S   NY+   S   +R   H  E +R H S  HKH L  H K+L P
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHSKDLEP 769


>05_04_0389 -
           20845490-20845600,20845697-20846006,20846097-20846242,
           20846319-20846426,20846508-20846615,20846997-20847109,
           20847340-20847437,20847530-20847714,20847811-20847953,
           20848293-20848377,20848486-20848624,20848686-20848780,
           20848894-20849037,20849114-20849206,20849310-20849376,
           20849529-20849641,20849750-20849845,20853885-20854058
          Length = 775

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +2

Query: 248 LRTVEAICPVLADWVGRNRGSLTSGYLCRLTRHFTTMQTSYRNKSYQPPRKLQFYGF 418
           LR  E I   +A ++ R +GS  S Y+     +F     SY   SY     L  Y F
Sbjct: 281 LRAPEDIAFAVALFIARKKGSFVSYYMYHGGTNFGRFAASYVTTSYYDGAPLDEYDF 337


>01_01_1137 + 9017211-9018584
          Length = 457

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
 Frame = -3

Query: 370 VRSLHSGKMSCESAQVAGGETSAVAAHPVREN-RADRLDGTEA--GRRVRQTTRSRLQHE 200
           ++ L SG  +  + +VAGG    V AHP+ E+ R  R+ G  A  G      TR   +  
Sbjct: 264 IKRLQSGIRARAAGKVAGGRVVRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTRCSGE-- 321

Query: 199 LPILEPPRSGCTCARVR----RLVGDCAVAG 119
             I    RSG  C R      RL G    AG
Sbjct: 322 -GIYFAARSGRLCGRAMADEWRLTGAVTEAG 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,710,662
Number of Sequences: 37544
Number of extensions: 450624
Number of successful extensions: 1228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)