Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H14
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    30   2.1  
U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protei...    29   3.7  
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   5.0  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    28   6.6  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    28   6.6  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 552 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 656
           CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 463 AVNLSILPVSGPGEISRVGSN*AAGSTPGG-ALPSIPLSFSFATILPPESKIFGFPEAAR 639
           A N S+   S P  + R  S  +  +TP G A P  PLS S +    P+S   G P + +
Sbjct: 513 ATNTSVSS-STPRSVVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLSRK 571

Query: 640 RAI 648
           R++
Sbjct: 572 RSM 574


>U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protein
           145 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 93  GIPRFMGDNCKPQSPARRSFSGLPGPLGQ 179
           G P   GDN +P +P +  F G PG  GQ
Sbjct: 183 GAPGAPGDNGQPGTPGQDGFPGQPGADGQ 211


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 547 QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 452
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 93  GIPRFMGDNCKPQSPARRSFSGLPG-PLGQGR 185
           GIP   GD+  P  P R    GLPG P G G+
Sbjct: 620 GIPGLKGDHGLPGLPGRPGSDGLPGYPGGPGQ 651


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 93  GIPRFMGDNCKPQSPARRSFSGLPG-PLGQGR 185
           GIP   GD+  P  P R    GLPG P G G+
Sbjct: 619 GIPGLKGDHGLPGLPGRPGSDGLPGYPGGPGQ 650


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,557,721
Number of Sequences: 27780
Number of extensions: 399297
Number of successful extensions: 1215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)