Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H10
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      42   8e-05
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    28   1.8  
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.4  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 3/177 (1%)
 Frame = -1

Query: 687 FRESAILTNPNYYMEGNTGHPVFATRYGKIXVNXCFGRHHVLNWMMFGQNGAEIVFNPSA 508
           +R+  +      + +  +  P+F T +GK+ V  C+         +   NGA+++     
Sbjct: 116 YRKVHLFDTERKHFKKGSDFPIFETSFGKLGVMICWDTAFPEVARIHALNGADLL----- 170

Query: 507 TIAGEGGSEYM--WNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFY 334
            +A    + Y   W++  +  A  NC    A NRVG +E  +                F+
Sbjct: 171 VVATNWENPYSDDWDLVTKARAFENCIPLVAANRVGTDEKLS----------------FF 214

Query: 333 GSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRL-DMYVNSLS 166
           G S   GP G     L   ++G++   VDL+  + +R     +   R+ D+Y   LS
Sbjct: 215 GHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 565 DVVPSEAXVHRDLAVSGREYRMAGVTFHVVV 657
           DVVP  A   R L    + Y  AG TFH V+
Sbjct: 25  DVVPKTAANFRALCTGEKGYGYAGSTFHRVI 55


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 440 FVIAAFLASTFHMYSLPPSPAIVAD 514
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,427
Number of Sequences: 5004
Number of extensions: 61874
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)