Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H10
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   239   3e-63
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711...    45   6e-05
08_02_0279 - 15249361-15249612,15251270-15251506,15252704-152527...    31   1.5  
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350...    30   1.9  
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280...    30   2.6  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    28   7.8  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  239 bits (584), Expect = 3e-63
 Identities = 114/175 (65%), Positives = 131/175 (74%)
 Frame = -1

Query: 654 YYMEGNTGHPVFATRYGKIXVNXCFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM 475
           YYMEGNTGHPVF T YGKI VN C+GRHH LNW+ FG NGAEIVFNPSAT+ GE  SE M
Sbjct: 237 YYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSATV-GEL-SEPM 294

Query: 474 WNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRC 295
           W +EARNAAI N YF  +INRVG E FPN FTS DGKP H D G FYGSS+F  PD    
Sbjct: 295 WPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCT 354

Query: 294 PGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELDYKPQVV 130
           P LSR RDGL+I+ +DLNL RQI+D+  + MT R D Y + LS+ L+ D+KPQV+
Sbjct: 355 PSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPDFKPQVI 409



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = -3

Query: 721 GNVIGKHRKNHIPRVGDFNES 659
           GN+IG HRKNHIPRVGDFNES
Sbjct: 215 GNIIGIHRKNHIPRVGDFNES 235


>02_04_0096 +
           19669428-19669525,19670770-19670818,19671041-19671132,
           19671235-19671386,19671478-19671524,19671617-19671650,
           19671769-19671935,19672070-19672166,19672239-19672408
          Length = 301

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 6/164 (3%)
 Frame = -1

Query: 654 YYMEGNTGHPVFATRYGKIXVNXCFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG----- 490
           Y+  G+TG   F T+Y  I V  C+ +            GAEI+F P+A I  E      
Sbjct: 137 YFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA-IGSEPQDNNL 195

Query: 489 GSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGL-FYGSSYFCG 313
            S   W    +  A  N     A NR+G E    E         H +  + F+G+S+  G
Sbjct: 196 DSREHWKRVMQGHAGANLVPLVASNRIGRETVETE---------HGESTITFFGNSFIAG 246

Query: 312 PDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMY 181
           P G      +   + +L+A  DL+  +  R     +  +R D+Y
Sbjct: 247 PTGEIVKLANDKDEDVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 290


>08_02_0279 -
           15249361-15249612,15251270-15251506,15252704-15252772,
           15252845-15252895,15254009-15254056,15254187-15254267,
           15256219-15256257,15256486-15256551,15258113-15258236,
           15258576-15258696,15258771-15258900,15259692-15259853
          Length = 459

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 719 KRDREASQEPHSESRRF*RIPTTTWKVTPAILYSRP 612
           KR+RE  + PH     F R+P       P +L++RP
Sbjct: 358 KRERELKRRPHQNGWLFKRVPEMRDPEEPVMLFTRP 393


>02_01_0487 +
           3503003-3503037,3505802-3505833,3506012-3506127,
           3506227-3506437,3506555-3506792,3507075-3507252,
           3507962-3508079,3508167-3508373,3509134-3509234
          Length = 411

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -1

Query: 522 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 343
           F+PS  I GEGG   ++  + RN  +      +  +R G +EF NE   A    +H++L 
Sbjct: 45  FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102

Query: 342 LFYG 331
             YG
Sbjct: 103 KLYG 106


>08_01_0317 -
           2807275-2807487,2807573-2807737,2807818-2807987,
           2808256-2808724,2810581-2810727,2810968-2810976,
           2811054-2811890
          Length = 669

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 633 RCYLPCSSWDSLKSPTLGMWFLR--CFPITF 719
           R +  C ++ +LK   LG WFLR  C+P+ F
Sbjct: 552 RSFPRCKTFSNLKYLKLGEWFLRDGCYPLLF 582


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 265 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 441
           +  SG      P+A+ A E   + E  ++ V R P     LVR + + +S +   E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,554,890
Number of Sequences: 37544
Number of extensions: 451096
Number of successful extensions: 1269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)