Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H09
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   1.0  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.1  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   5.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.2  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   7.2  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   7.2  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    25   9.5  

>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 285 PRYTFPQSGRGNAVYHHPAS-YCG 353
           P Y   +SG+G+ VY HP S  CG
Sbjct: 49  PYYFIEKSGKGSVVYFHPTSDLCG 72


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
 Frame = +2

Query: 185 YIHPTVPRTPDRWPPAKR----PPVPSF------SGPRARFDGAALHLPPERSGERGLPS 334
           Y++ + P+   +W    R    PP PS       SGP   +  +A    P  S     P+
Sbjct: 26  YVNESDPKAKPQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPA 85

Query: 335 PGFLLRVERAEHATPRLGPSPHKTG 409
           P       RA  A P+  P P + G
Sbjct: 86  PAPAASQNRAYGAAPQ--PYPPQGG 108


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 196 GMDVMCSASTLSRRFNSPDWAPARSEVGRRL*AAGVF 86
           G+ V+ +++ L  RF  P+W P R+ +   +   G+F
Sbjct: 197 GIGVIVASTCLLDRFRQPEWRPYRALIFVLMGLFGIF 233


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = +2

Query: 98  RSQPAPY-LGPGRSPVGAIETARQG*RRAHYIHPTVPRTPDRWPPAKRPPVPSFSGPRAR 274
           ++ P P  L P   P   +++          + P  P+ P   PP  + PV + S   + 
Sbjct: 163 KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP--PPLSQAPVANTSSRPSS 220

Query: 275 FDGAALHLPPERSGERGLPSPG 340
           F   A H P   S     P+ G
Sbjct: 221 FAPPAGHAPNVTSESPKFPNRG 242


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 371 RALHAQPAIGSRVMVDRVPPTALGEGVTRRHQSGLSAR 258
           + L ++P++      D+  P+   E +TR++  G+S R
Sbjct: 207 QTLASRPSLPDLTSADKSQPSDEAESITRKNSIGMSTR 244


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 194  PTVPRTPDRWPPAKRPPVPSFSGPRARFDG 283
            P+VP +P + P A +  +P+F G    + G
Sbjct: 1578 PSVPTSPLKAPTASQLIIPNFDGSITNYSG 1607


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/50 (40%), Positives = 22/50 (44%)
 Frame = +2

Query: 194 PTVPRTPDRWPPAKRPPVPSFSGPRARFDGAALHLPPERSGERGLPSPGF 343
           P V R   R  P  + PV   +GP  R  G     PP   G RG P PGF
Sbjct: 98  PGVARPAGRGIPLGQAPV-GLAGP-VRGVGYTAPPPPAGFG-RGAPPPGF 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,745
Number of Sequences: 5004
Number of extensions: 49039
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)