Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H08
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    29   0.99 
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   3.0  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    26   5.3  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    26   7.0  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.3  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.3  

>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 21/89 (23%), Positives = 38/89 (42%)
 Frame = -2

Query: 268 ERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 89
           E N  F   V    + +G  +    G  L+++  + + +         +PRE    ++  
Sbjct: 15  EPNSHFRRTVEEKSQLSGTNEESLGGHTLSSNAFKNNSSSISPSSSAKDPREQ---RKRT 71

Query: 88  FTSRVSHSKRETRRRSPFGSRRSMQKKKK 2
           F    +HS R  +   PF SR+S ++K K
Sbjct: 72  FPLNDTHSSRARQHERPFRSRKSRRRKGK 100


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 669 YICQRITQVS*GQL--SEDRTXAWSKRAKAGLIQMFSTHRDCESTAY 535
           Y+C  +  +S G L  SED +  W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 724 NSXRIRFEDTARRGVDWAVHLSKNNAGVLRPAQRGQNXR 608
           NS  +   ++AR   DW V ++ N+  V+  A RGQ  +
Sbjct: 392 NSAIVAASNSARDMSDWYVRITYNSTPVVMGACRGQGYK 430


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 743 KRSSPFKLPADPVR 702
           K S+PFK+P DP++
Sbjct: 104 KNSAPFKVPVDPIK 117


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 292 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 143
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 220 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 95
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,486
Number of Sequences: 5004
Number of extensions: 61648
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)