Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H08
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.4  
07_03_0846 - 21983581-21986055                                         29   3.2  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.2  
03_05_0183 - 21681673-21682524                                         29   4.2  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.2  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   5.5  
07_03_0414 + 17892133-17893590                                         28   7.3  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 163 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 29
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 21  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 170
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 250 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 152
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 462 SQAFIATLLFDPSMSALPIIAKQNSPS 382
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 523 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 416
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -2

Query: 310 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 146
           LL    CD N A      +   LVHAL  AA  A   +A   L         A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 145 GKDMLTVEPRESGGSK 98
           G   L V   E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204


>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 242 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 418
           Q   + V + L S+T+ +       T   H GL+ A  PF WV  P + G    A +  A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334

Query: 419 DIEGSKSNVAMNAWLPQ 469
                KS   +  W PQ
Sbjct: 335 VAAAGKSKARVVEWAPQ 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,938,421
Number of Sequences: 37544
Number of extensions: 471943
Number of successful extensions: 1319
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)