Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H07
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   5.4  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    26   7.2  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.5  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   9.5  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    25   9.5  

>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 619 RHDVCKRSV--RSLSPHPLEIPSGYSITIXQDSR 524
           R DV K+SV   S S  PL++  GYS+ +   SR
Sbjct: 61  RLDVAKKSVYAESESKLPLKMKKGYSVHLKDQSR 94


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 298 NGAFRHHKHR*PSSSNPSLATKGSTSELTHRHSPLSFSPDLL 173
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 210 WVSSLVEPFVASDGFDEDGHRCLWCLK 290
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 490 EIHIPKEPWCSDGYPAXS*LNNLKGF 567
           E  +   P+C   YPA S LN+  G+
Sbjct: 349 ETELLSTPYCHTSYPAMSRLNSSSGY 374


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 664 SLRNKVTXLQNLYTPRHDVCKRSVRSLSPHPLEIPS 557
           SL  K+   Q+LY+   D CK  +   SP  LE+PS
Sbjct: 211 SLMPKILDYQHLYSKPCDFCKSLI---SPVYLELPS 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,792
Number of Sequences: 5004
Number of extensions: 55535
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)