Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H07
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0151 - 25999366-26000044,26004820-26005637                       31   1.1  
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062...    30   1.9  
05_06_0153 - 26019377-26020813                                         29   3.2  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           29   5.7  
06_01_1200 + 10323013-10324428                                         29   5.7  
02_02_0537 + 11308195-11309667                                         29   5.7  
01_05_0645 - 23899579-23904483                                         29   5.7  
06_01_1204 + 10397131-10398498                                         28   7.5  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   9.9  

>05_06_0151 - 25999366-26000044,26004820-26005637
          Length = 498

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 GFDEDGHRCLWCLKAPLMDQEDP 317
           G ++ GHR LW ++AP++   DP
Sbjct: 315 GLEKSGHRFLWVVRAPIVVNNDP 337


>02_05_0530 -
           29804939-29805547,29805658-29805885,29805978-29806261,
           29807095-29807199,29807648-29808155
          Length = 577

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 278 VVPKSTVNGSGGSVMTCFGRRRRFTIRS 361
           +VP+    G GG++M   GR R++ +RS
Sbjct: 120 IVPQEAAVGGGGAMMAVVGRSRQYVLRS 147


>05_06_0153 - 26019377-26020813
          Length = 478

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 249 GFDEDGHRCLWCLKAPLMDQEDP**RALGDVDG-LPFGLLGR 371
           G ++ GHR LW ++AP++  +DP      D+D  LP G L R
Sbjct: 303 GLEKSGHRFLWVVRAPVV-SDDP---DRPDLDALLPAGFLER 340


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -2

Query: 343  STSPKARHYGSS*SINGAFRHHKHR*PSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGS 164
            ST P +       +IN   +   H  PSSS     T   T  + H H P SF P  +  +
Sbjct: 973  STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRT 1031

Query: 163  RFRSGGRFC 137
            + ++  R C
Sbjct: 1032 QPKAPCRSC 1040


>06_01_1200 + 10323013-10324428
          Length = 471

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 249 GFDEDGHRCLWCLKAPLMDQED 314
           G +  GHR LW +K+ ++D++D
Sbjct: 295 GLETSGHRFLWVVKSTVVDRDD 316


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -2

Query: 343 STSPKARHYGSS*SINGAFRHHKHR*PSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGS 164
           ST P +       +IN   +   H  PSSS     T   T  + H H P SF P  +  +
Sbjct: 131 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRT 189

Query: 163 RFRSGGRFC 137
           + ++  R C
Sbjct: 190 QPKAPCRSC 198


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -2

Query: 343  STSPKARHYGSS*SINGAFRHHKHR*PSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGS 164
            ST P +       +IN   +   H  PSSS     T   T  + H H P SF P  +  +
Sbjct: 1250 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRT 1308

Query: 163  RFRSGGRFC 137
            + ++  R C
Sbjct: 1309 QPKAPCRSC 1317


>06_01_1204 + 10397131-10398498
          Length = 455

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 249 GFDEDGHRCLWCLKAPLMDQED 314
           G +  GHR LW +K  ++D++D
Sbjct: 276 GLEASGHRFLWVVKGAVVDRDD 297


>11_01_0110 +
           850780-850805,851465-851537,851558-851720,851947-852260,
           852330-852409,852506-852848,853068-853166,853240-853360,
           853567-853723,853976-854099,855275-855368,855866-857259,
           857882-857924,858240-858458,859379-859605,859701-859948,
           860246-860552,860725-861153
          Length = 1486

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 403 PSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHR 269
           P H + +    RP RPNG P     A   GS   I       +HR
Sbjct: 59  PRHSAAFSRSLRPCRPNGPPPAFASAEFPGSVPDIAQMPPRRRHR 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,167
Number of Sequences: 37544
Number of extensions: 444862
Number of successful extensions: 968
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)