Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_H05
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.1  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   8.0  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = -2

Query: 524  TPXPXPXPLXPXXPPXXXXPPXPHDRPXPPXXXPTXQGRRXRPXXP 387
            TP   P    P        PP P   P PP   P   G    P  P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/60 (28%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
 Frame = -2

Query: 530 PXTPXPXPXPLXPXXPPXXXXPPXPHDRPXPP-XXXPTXQGRRXRPXXPRSXATXAXCLA 354
           P    P P P+ P        PP    RP  P    P        P  P S    A  LA
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = -2

Query: 521  PXPXPXPLXPXXPPXXXXPPXPHDRPXPPXXXPT 420
            P P P    P   P    PP P     PP   P+
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
 Frame = -2

Query: 530  PXTPXPXPXPLX--PXXPPXXXXPPXPHDRPXPPXXXPT 420
            P  P P P P    P  P     PP P     PP   P+
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPS 1098


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 524 TPXPXPXPLXPXXPPXXXXPPXP 456
           TP P P P+ P  P     PP P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPP 765


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 321 LRSLISNLSNTCDLTPLPEWSCEQSAW 241
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,293
Number of Sequences: 5004
Number of extensions: 12639
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)