Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_G21
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.35
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 31 1.1
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 30 2.5
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 29 3.3
07_03_0846 - 21983581-21986055 29 3.3
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
07_03_1086 + 23858419-23859423,23859527-23859610 29 4.3
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 7.5
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 28 7.5
01_06_0695 - 31292622-31293317 28 7.5
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.9
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.9
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 89 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 217
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 657 QPSVHSDVAFDPSMSALPIIAKQNSPSVGLFTPSKGNVSWA*TVVR 520
Q + S V +SA P + SPSVG FT K +VS + T R
Sbjct: 302 QDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKASVSHSGTAQR 347
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 357 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 223
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 657 QPSVHSDVAFDPSMSALPIIAKQNSPSVGLFTPSKGNVS 541
Q + S V +SA P + SPSVG FT K +VS
Sbjct: 321 QDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKASVS 359
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 708 FLPRGPRKVTTGIXGLWQPSVHSDV 634
+ PRGPR + G L QP++HS+V
Sbjct: 19 YQPRGPRVIFNGNGSLPQPNLHSNV 43
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 215 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 364
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 444 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 346
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 29.1 bits (62), Expect = 4.3
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Frame = -3
Query: 579 SVGLFTPSKGNVSWA*TVVRQVSFTLLMACR-CDSNTAQYERNRSFGHLVHALGRAAGGA 403
+ G P +S A ++++ T L+ CD N A + LVHAL AA A
Sbjct: 103 AAGAVRPLVALLSHADPLLQEHGVTALLNLSICDENKAIIVEAGAIRPLVHALKSAASPA 162
Query: 402 KLPSAGLCLNA-----SKAEASLAESGKDMLTVEPRESGGSK 292
+A L A AS+ +G L V E+GG++
Sbjct: 163 ARENAACALLRLSQLDGSAAASIGRAGAIPLLVSLLETGGAR 204
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +1
Query: 559 WGEQSNAWRILLRNDRKSRHRRIKSNVAMNAWLPQAXYPCGNFSXPSW 702
W + W+ RND S+ + + + +N P P GN P W
Sbjct: 699 WSCKGGDWK---RNDDFSQDKPYRKKLVLNEGYPLCQMPKGNHEDPRW 743
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 616 VGSSYHCEAK-FAKRWIVHPIKREREL 539
V SYHC AK F+ W H + ER L
Sbjct: 87 VAKSYHCSAKCFSDAWQHHRVLHERAL 113
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 41 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 175
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 35 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 214
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 215 D 217
+
Sbjct: 791 E 791
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.9
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 366 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 193
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 192 TRASR 178
TRA+R
Sbjct: 64 TRAAR 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,830,805
Number of Sequences: 37544
Number of extensions: 478741
Number of successful extensions: 1352
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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