Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_G20
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.81 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   10.0 

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 312 SLISNLSNTCDLTPLPEWSCERSAWWGACGRVL 214
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 619 CPVRCRARTVARWKLAWQCS 560
           C VRC A +  RW   W+ S
Sbjct: 19  CSVRCSAASGLRWFEIWRDS 38


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 328 WRAAAACTRDTRGALPASPSRLDT 399
           W    ACT  T G +  +PS  DT
Sbjct: 487 WVFTLACTAGTLGIIFQAPSLYDT 510


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +3

Query: 699 VHPKXEXNVQVCMSLGQLFN 758
           V+P+ + NVQ+C  + + ++
Sbjct: 645 VYPEFQENVQLCSEISESYS 664


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 468 LAARHWTTTSCGFSVH 421
           LAAR  T++SC +  H
Sbjct: 331 LAAREITSSSCSYMAH 346


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 778 YHSNFXQLNNWP 743
           YH  F Q++ WP
Sbjct: 64  YHHKFFQVHEWP 75


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 569 PRELPPRHGPGSAPXWTDPS 628
           P + PP  GP  AP   +PS
Sbjct: 42  PSQGPPPGGPPGAPPSQNPS 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,508
Number of Sequences: 438
Number of extensions: 1958
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)