Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_G18
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       28   7.0  
AC006774-2|AAF60616.1|  143|Caenorhabditis elegans Heat shock pr...    28   7.0  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    28   9.2  

>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = +3

Query: 108  RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDANGLRRRVSRFECETRLVK 287
            R   KS+ D +E        PD ++ D R   +  +     AN   R+V    C T L  
Sbjct: 1076 RSPNKSNHDVNETMKALTEMPDYQAADERPNNQPTTSTYGTANTENRKVHINGCHTLL-- 1133

Query: 288  SHCLEPPDSRGSTV 329
            S  L  P   G TV
Sbjct: 1134 SLALSMPSRMGETV 1147


>U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical
           protein F18E3.11 protein.
          Length = 90

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 96  STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDANGLRRRVS 257
           STT    RKSST    PRH   +     +   ++ +   S  L D N L+R+ S
Sbjct: 30  STTQVVSRKSSTSSDAPRHSLNITVG-EAEMCQITRNNSSNSLNDFNCLQRKNS 82


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = +3

Query: 108  RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDANGLRRRVSRFECETRLVK 287
            R   KS+ D +E        PD ++ D R   +  +     AN   R+V    C T L  
Sbjct: 1076 RSPNKSNHDVNETMKALTEMPDYQAADERPNNQPTTSTYGTANTENRKVHINGCHTLL-- 1133

Query: 288  SHCLEPPDSRGSTV 329
            S  L  P   G TV
Sbjct: 1134 SLALSMPSRMGETV 1147


>AC006774-2|AAF60616.1|  143|Caenorhabditis elegans Heat shock
           protein protein 16.41 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 665 WQPSVHXDVAF*SFNVGSSYHCEAKFAQALDCSPIKRER-ELGLDRRE 525
           W+ + H    F S N+G   + E+KF+  LD S  K E  ++ LD RE
Sbjct: 30  WRNADHNSFNF-SDNIGEIVNDESKFSVQLDVSHFKPENLKIKLDGRE 76


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -1

Query: 451 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 272
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 271 SH--SKRETRRRSP 236
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 163 YIRTFGAVMHVLRKKPIASISAMQMGFDVASRVLNA 270
           YIRT     +VLRKKP  S+       D   +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 238 PFASRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWR 107
           P   R+ +LS FF ++ SR+RRS  +    R       D  SW+
Sbjct: 150 PEKRRQELLSEFFASKPSRVRRSTMSRKIAREPTPLTPDMLSWQ 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,915,459
Number of Sequences: 27780
Number of extensions: 373346
Number of successful extensions: 1041
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)