Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_G13
(970 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.011
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.32
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.75
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.011
Identities = 24/70 (34%), Positives = 25/70 (35%)
Frame = +1
Query: 754 PPPPPXAPXXXPPXXXXPXPXPPXXXXXXXXXXSSPXXXXXPXXPPPPXPXXXXXAXXSA 933
PPPPP A P P P PP +P P PPPP P
Sbjct: 732 PPPPPPA-VIVPTPAPAPIPVPP----------PAPIMGGPP--PPPPPPGVAGAGPPPP 778
Query: 934 PPPPXXXSPG 963
PPPP S G
Sbjct: 779 PPPPPAVSAG 788
Score = 33.5 bits (73), Expect = 0.046
Identities = 22/72 (30%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Frame = +1
Query: 754 PPPPPXAPXXXPPXXXXPXPXPPXXXXXXXXXXSSPXXXXXPXXPPPPXPXXXXXAXXS- 930
PPPPP P P P PP P PPPP P A S
Sbjct: 733 PPPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 931 --APPPPXXXSP 960
AP P P
Sbjct: 792 YYAPAPQAEPEP 803
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.32
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 754 PPPPPXAPXXXPPXXXXPXPXP 819
PPPPP P PP P P P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 877 PXXPPPPXPXXXXXAXXSAPPPP 945
P PPPP P PPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 757 PPPPXAPXXXPPXXXXPXPXPP 822
PPPP P P P P PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 886 PPPPXPXXXXXAXXSAPPPP 945
PPPP P + PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.75
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +1
Query: 760 PPPXAPXXXPPXXXXPXPXPPXXXXXXXXXXSSPXXXXXPXXPPPPXP 903
PP PP P P PP + P P PPPP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPS-APPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +1
Query: 853 SSPXXXXXPXX-PPPPXPXXXXXAXXSAPPPPXXXS 957
S+P P PPPP SAPPPP S
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/63 (28%), Positives = 18/63 (28%)
Frame = +1
Query: 757 PPPPXAPXXXPPXXXXPXPXPPXXXXXXXXXXSSPXXXXXPXXPPPPXPXXXXXAXXSAP 936
PPP AP P P PP P P P P A AP
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP-SVAAPPVPKPSVAVPPVPAPSGAP 1121
Query: 937 PPP 945
P P
Sbjct: 1122 PVP 1124
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.0
Identities = 20/72 (27%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Frame = +1
Query: 754 PPPPPXAPXXXPPXXXXPXPXP---PXXXXXXXXXXSSPXXXXXPXXPPPPXPXXXXXAX 924
P PP +P PP P P P S P P PP P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP------- 199
Query: 925 XSAPPPPXXXSP 960
PPPP +P
Sbjct: 200 -KVPPPPLSQAP 210
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +1
Query: 754 PPPPPXAPXXXPPXXXXPXPXPPXXXXXXXXXXSSPXXXXXPXXPPPPXP 903
P PP AP P P PP P P P P P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 25.8 bits (54), Expect = 9.2
Identities = 17/65 (26%), Positives = 17/65 (26%), Gaps = 3/65 (4%)
Frame = +1
Query: 754 PPPPPXAPXXXPPXXXXPXPX---PPXXXXXXXXXXSSPXXXXXPXXPPPPXPXXXXXAX 924
PPPP PP PP S P PPPP P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 925 XSAPP 939
PP
Sbjct: 374 RQPPP 378
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/50 (26%), Positives = 14/50 (28%)
Frame = +1
Query: 754 PPPPPXAPXXXPPXXXXPXPXPPXXXXXXXXXXSSPXXXXXPXXPPPPXP 903
P PP P P P P + P P PP P P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.152 0.545
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,269
Number of Sequences: 5004
Number of extensions: 17854
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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