Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_G09
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   4.1  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    27   4.4  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 335 LRSLMSNLSNTXDLTPLPEWSCEQSAW 255
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.6 bits (46), Expect(2) = 4.1
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -2

Query: 653 GTPPRXPXXPXXXAGRPQXXPPXRATLXG 567
           G PP  P      AG P   PP  A   G
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 22.2 bits (45), Expect(2) = 4.1
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = -2

Query: 839 PPQXPXPEXGQSPXSXXXNPPPRXXIRGGXXPXP 738
           PP  P      +P       PP   I GG  P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 6   FFFLENNYVYFAARVYCLSALFIILRPRSTALPSXXXXXXWIP*IVEGSSRSWS 167
           F+F  NNY+    + YC SAL      RS           +I  +++G +R W+
Sbjct: 455 FYFSANNYLIDVYQNYCASALAAKTMVRSA---GGAAFPLFIDYMMDGMTRQWA 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,398
Number of Sequences: 5004
Number of extensions: 17538
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)