Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_G09
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z46266-2|CAA86410.1|   99|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC006666-4|AAK21415.1|  109|Caenorhabditis elegans Hypothetical ...    29   5.5  
AY255668-1|AAQ96605.1|  167|Caenorhabditis elegans MiRP5 protein.      28   9.6  
AF098994-1|AAC67472.2|  167|Caenorhabditis elegans Hypothetical ...    28   9.6  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 23/82 (28%), Positives = 25/82 (30%)
 Frame = -2

Query: 833 QXPXPEXGQSPXSXXXNPPPRXXIRGGXXPXPHXXXXXPXXXXXXXXXRCXXFXTAXXXR 654
           Q P P+ G    S    PPPR    GG  P P      P               T    +
Sbjct: 109 QVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQ 168

Query: 653 GTPPRXPXXPXXXAGRPQXXPP 588
             PPR P  P      P   PP
Sbjct: 169 RRPPRTPPSPEPR--NPPRTPP 188


>Z46266-2|CAA86410.1|   99|Caenorhabditis elegans Hypothetical
           protein C07B5.3 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 359 CRRAXXXPLRSLMSNLSNTXDLTPLPEWSCEQSAWWG 249
           C+ +      SLM N+ N  + T +P   C+++ W+G
Sbjct: 19  CQNSQVGAASSLMPNVCNAGEETAMPCVCCKKACWFG 55


>AC006666-4|AAK21415.1|  109|Caenorhabditis elegans Hypothetical
           protein H31G24.1 protein.
          Length = 109

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 838 PPXPPXPXPARAPXP 794
           PP PP P PA+AP P
Sbjct: 88  PPPPPQPAPAQAPAP 102


>AY255668-1|AAQ96605.1|  167|Caenorhabditis elegans MiRP5 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 835 PXPPXPXPARAPXPTXXTXXXXXXFAAAXXPPHT 734
           P PP P P  +P PT  +      FA +  P  T
Sbjct: 87  PIPPQPAPPSSPKPTEESATPSSSFAPSTEPTPT 120


>AF098994-1|AAC67472.2|  167|Caenorhabditis elegans Hypothetical
           protein T06A4.2 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 835 PXPPXPXPARAPXPTXXTXXXXXXFAAAXXPPHT 734
           P PP P P  +P PT  +      FA +  P  T
Sbjct: 87  PIPPQPAPPSSPKPTEESATPSSSFAPSTEPTPT 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,059,334
Number of Sequences: 27780
Number of extensions: 138463
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)