Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_G07
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 250 2e-67
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 250 2e-67
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 31 0.25
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.77
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.1
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.5
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 250 bits (612), Expect = 2e-67
Identities = 118/180 (65%), Positives = 139/180 (77%)
Frame = -3
Query: 648 MIDCIGVTKXKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYH 469
MID IGVT+ KG +G T+RW TK+LPRKTH+ LRKVACIGAWHP+ V +TVARAG GY
Sbjct: 214 MIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYM 273
Query: 468 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKG 289
HRT++N KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G
Sbjct: 274 HRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNG 326
Query: 288 CCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 327 ATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 250 bits (612), Expect = 2e-67
Identities = 118/180 (65%), Positives = 139/180 (77%)
Frame = -3
Query: 648 MIDCIGVTKXKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYH 469
MID IGVT+ KG +G T+RW TK+LPRKTH+ LRKVACIGAWHP+ V +TVARAG GY
Sbjct: 214 MIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYM 273
Query: 468 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKG 289
HRT++N KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G
Sbjct: 274 HRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNG 326
Query: 288 CCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 327 ATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 30.7 bits (66), Expect = 0.25
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = -3
Query: 657 PR*MIDCIGVTKXKGYKGVTSRWHTK--KLPRKTHKXLRKVACIGA-WHPSRVSFTVARA 487
P+ +D G+TK KG+ GV RW R G PSRV A
Sbjct: 147 PKQYVDVKGITKGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRVLPGRKMA 206
Query: 486 GQKGYHHRTEMNKKIYRI 433
G G+ RT N ++ +
Sbjct: 207 GHMGHRSRTVKNLLVWAV 224
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 400 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 498
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 367 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 489
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 130 HGYTQEGSYSRRSCGYHNPS 71
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 352 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 480
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 412 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 537
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,629
Number of Sequences: 5004
Number of extensions: 68745
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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