Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_G07
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 263 1e-70
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 256 1e-68
11_04_0146 - 14091671-14092357,14092996-14093229 30 1.9
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 30 1.9
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.2
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.5
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329 28 7.5
04_01_0592 + 7808821-7809210 28 9.9
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 263 bits (645), Expect = 1e-70
Identities = 122/178 (68%), Positives = 142/178 (79%)
Frame = -3
Query: 648 MIDCIGVTKXKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYH 469
MID IGVTK KGY+GV +RW +LPRKTH+ LRKVACIGAWHP+RVS+TVARAGQ GYH
Sbjct: 217 MIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYH 276
Query: 468 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKG 289
HRTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKG
Sbjct: 277 HRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKG 330
Query: 288 CCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
CC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 331 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 256 bits (627), Expect = 1e-68
Identities = 118/170 (69%), Positives = 138/170 (81%)
Frame = -3
Query: 648 MIDCIGVTKXKGYKGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYH 469
MID IGVTK KGY+GV +RW +LPRKTH+ LRKVACIGAWHP+RVS+TVARAGQ GYH
Sbjct: 217 MIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYH 276
Query: 468 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKG 289
HRTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKG
Sbjct: 277 HRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKG 330
Query: 288 CCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 139
CC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 331 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
>11_04_0146 - 14091671-14092357,14092996-14093229
Length = 306
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 618 KGYKGVTSRWHTKKLPRKTHKXLRKVACIGAW 523
K YK T RWH K++ K K KV +W
Sbjct: 266 KIYKDRTKRWHDKRIKHKEFKAGDKVLLFNSW 297
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 1 FFFFFFALSNVYFHGRHLRLRSSRWGCGSRSFFANTILLEC 123
FFFFFF +VY RH R R R R F ++ C
Sbjct: 102 FFFFFFFSGDVYCGHRHFRRRRRRRQWDGRLVFGSSGASAC 142
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 372 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 277
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -3
Query: 516 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 367
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 366 SEKSITPMGGFPHYGEVNN 310
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
Length = 264
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 618 KGYKGVTSRWHTKKLPRKTHKXLRKV 541
K YK T RWH K++ K K KV
Sbjct: 29 KIYKDKTKRWHDKRIKHKEFKAREKV 54
>04_01_0592 + 7808821-7809210
Length = 129
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 618 KGYKGVTSRWHTKKLPRKTHKXLRKV 541
K YK T RWH K++ K K L KV
Sbjct: 29 KIYKERTKRWHDKRIKIKKFKPLDKV 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,661,959
Number of Sequences: 37544
Number of extensions: 459977
Number of successful extensions: 1114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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