Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_G06
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442...    30   2.7  
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333...    29   4.7  
03_05_0958 - 29200048-29200731                                         29   4.7  
07_03_1058 + 23631819-23631943,23632032-23632101,23632196-236333...    29   6.2  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           29   6.2  

>03_01_0601 +
           4423831-4424115,4424278-4424406,4424615-4424779,
           4424925-4425230,4425387-4425448,4425776-4426145,
           4426427-4426555,4427233-4427397,4427534-4427839,
           4427928-4428068
          Length = 685

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +1

Query: 352 RPRLESGGWIGPGVFYGGQNSVDG----VSRRSDGSL-NELCLYRPPTVHAYRPFA 504
           +P L SGGWIG G   GG +++ G    V   + G L   LC       HA R FA
Sbjct: 332 KPALTSGGWIGGG---GGDSTMGGGMRVVVTGATGYLGGRLCAALAAAGHAVRAFA 384


>06_03_0108 -
           16732215-16732572,16732623-16732741,16733344-16733393,
           16734619-16734820
          Length = 242

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 358 RLESGGWIGPGVFYGGQNSVDGVSRRSDGS 447
           R  SGG  GP V YGG+    GV R+ D S
Sbjct: 140 RRGSGG-TGPAVDYGGRGDSGGVRRKEDSS 168


>03_05_0958 - 29200048-29200731
          Length = 227

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 334 KLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDG 444
           +L+   R R +SGG  G G    G +S DG S+ SDG
Sbjct: 150 RLIEYVRSRNKSGGGGGGGGVAAGCSSSDGDSKSSDG 186


>07_03_1058 +
           23631819-23631943,23632032-23632101,23632196-23633368,
           23633469-23634266
          Length = 721

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 383 VPVSS-MEVKTAWMASPGDLTVH*TSSAYIDLPPYTPTAH 499
           VPVS      TA+  SPG  T   TS       PYT TAH
Sbjct: 529 VPVSGGAAAATAYTPSPGCTTAVPTSQPLSTSSPYTDTAH 568


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 352 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 254
           AG + +SH   + P L +FR  ++  L+K  GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,686,195
Number of Sequences: 37544
Number of extensions: 487793
Number of successful extensions: 929
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)